miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
646 3' -52.9 AC_000017.1 + 5182 0.66 0.729072
Target:  5'- cCCaCAGCuCGGucACGuGCUCUACGGCa -3'
miRNA:   3'- cGGcGUUG-GUCcuUGU-CGAGAUGUCG- -5'
646 3' -52.9 AC_000017.1 + 5235 0.66 0.729072
Target:  5'- uUCGCGGgUuGGGGCGGCUUucgcugUACGGCa -3'
miRNA:   3'- cGGCGUUgGuCCUUGUCGAG------AUGUCG- -5'
646 3' -52.9 AC_000017.1 + 3370 0.66 0.717866
Target:  5'- cCCGC-ACCAGGuGCAGaCcCUGCgAGUg -3'
miRNA:   3'- cGGCGuUGGUCCuUGUC-GaGAUG-UCG- -5'
646 3' -52.9 AC_000017.1 + 899 0.66 0.717866
Target:  5'- gGCUGCucgggcuGCCGGGAAaGGUgagGCGGCu -3'
miRNA:   3'- -CGGCGu------UGGUCCUUgUCGagaUGUCG- -5'
646 3' -52.9 AC_000017.1 + 26636 0.66 0.706566
Target:  5'- aGCgGUAGCCuuGGcGCuguuguuGCUCUugGGCu -3'
miRNA:   3'- -CGgCGUUGGu-CCuUGu------CGAGAugUCG- -5'
646 3' -52.9 AC_000017.1 + 25535 0.66 0.706566
Target:  5'- -gCGCGGCCAcGGAGC-GCUCguugaaGGCc -3'
miRNA:   3'- cgGCGUUGGU-CCUUGuCGAGaug---UCG- -5'
646 3' -52.9 AC_000017.1 + 4953 0.66 0.706566
Target:  5'- aGUCGCAGCugcuCAGGAACcuGCUUUcuuccCAGCu -3'
miRNA:   3'- -CGGCGUUG----GUCCUUGu-CGAGAu----GUCG- -5'
646 3' -52.9 AC_000017.1 + 10872 0.66 0.705431
Target:  5'- cGCgCGCGGCCAGuGGCcaaaaaaAGCUagcGCAGCa -3'
miRNA:   3'- -CG-GCGUUGGUCcUUG-------UCGAga-UGUCG- -5'
646 3' -52.9 AC_000017.1 + 17315 0.66 0.705431
Target:  5'- cGCCgagGCGACCGGGGACGuuugugucuccauGCccUCUgugGCAGUg -3'
miRNA:   3'- -CGG---CGUUGGUCCUUGU-------------CG--AGA---UGUCG- -5'
646 3' -52.9 AC_000017.1 + 26202 0.66 0.702023
Target:  5'- aGCCGCGGgcccuugcuucCCAGGA-UGGCacccaaaaagaagCUGCAGCu -3'
miRNA:   3'- -CGGCGUU-----------GGUCCUuGUCGa------------GAUGUCG- -5'
646 3' -52.9 AC_000017.1 + 23437 0.66 0.695185
Target:  5'- gGCUG-AACgAGGAGCAccGCgggUUGCAGCu -3'
miRNA:   3'- -CGGCgUUGgUCCUUGU--CGa--GAUGUCG- -5'
646 3' -52.9 AC_000017.1 + 8669 0.66 0.695185
Target:  5'- cGCgCGCGGgCAGGAGCuGGUgCUGC-GCa -3'
miRNA:   3'- -CG-GCGUUgGUCCUUG-UCGaGAUGuCG- -5'
646 3' -52.9 AC_000017.1 + 2175 0.66 0.694043
Target:  5'- aGCaGCAggaggaaGCCAGGcGGCGGCg--GCGGCa -3'
miRNA:   3'- -CGgCGU-------UGGUCC-UUGUCGagaUGUCG- -5'
646 3' -52.9 AC_000017.1 + 12221 0.67 0.660688
Target:  5'- aGCUGCcuCCAGGGcgcguCGGCUUggggccCAGCg -3'
miRNA:   3'- -CGGCGuuGGUCCUu----GUCGAGau----GUCG- -5'
646 3' -52.9 AC_000017.1 + 26749 0.67 0.660688
Target:  5'- aCUGC-ACCGGcGGCAGCg--GCAGCa -3'
miRNA:   3'- cGGCGuUGGUCcUUGUCGagaUGUCG- -5'
646 3' -52.9 AC_000017.1 + 18862 0.67 0.660688
Target:  5'- cGCgGCGACUc--AGCAGCUCcucugGCGGCg -3'
miRNA:   3'- -CGgCGUUGGuccUUGUCGAGa----UGUCG- -5'
646 3' -52.9 AC_000017.1 + 16278 0.67 0.657218
Target:  5'- cGCCGCGcguugggcggcaguGCCGGGu-CGGCg--GCGGUg -3'
miRNA:   3'- -CGGCGU--------------UGGUCCuuGUCGagaUGUCG- -5'
646 3' -52.9 AC_000017.1 + 5526 0.67 0.649114
Target:  5'- cGCCGC-ACgAGGGGCAGU---GCAGa -3'
miRNA:   3'- -CGGCGuUGgUCCUUGUCGagaUGUCg -5'
646 3' -52.9 AC_000017.1 + 33242 0.67 0.637521
Target:  5'- aUCGUGcAUCAGGAuaggGCGGUggugCUGCAGCa -3'
miRNA:   3'- cGGCGU-UGGUCCU----UGUCGa---GAUGUCG- -5'
646 3' -52.9 AC_000017.1 + 1754 0.67 0.637521
Target:  5'- -gCGUAACUugcuGGAACagAGCUCUaACAGUa -3'
miRNA:   3'- cgGCGUUGGu---CCUUG--UCGAGA-UGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.