miRNA display CGI


Results 1 - 20 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6461 3' -51.6 NC_001847.1 + 6872 0.66 0.986793
Target:  5'- gCGGGuagGGCCUUGcCGAGGAGCAGUGc -3'
miRNA:   3'- gGCCU---UUGGGGUcGUUCUUCGUCAUc -5'
6461 3' -51.6 NC_001847.1 + 105234 0.66 0.986793
Target:  5'- cCCGaGggGCCCCccgcGGCGGccGGCAGg-- -3'
miRNA:   3'- -GGC-CuuUGGGG----UCGUUcuUCGUCauc -5'
6461 3' -51.6 NC_001847.1 + 23797 0.66 0.986793
Target:  5'- cUCGG-GACCCCAcGUGAGAacacuGGCAGa-- -3'
miRNA:   3'- -GGCCuUUGGGGU-CGUUCU-----UCGUCauc -5'
6461 3' -51.6 NC_001847.1 + 126610 0.66 0.986793
Target:  5'- cUCGG-GACCCCAcGUGAGAacacuGGCAGa-- -3'
miRNA:   3'- -GGCCuUUGGGGU-CGUUCU-----UCGUCauc -5'
6461 3' -51.6 NC_001847.1 + 126421 0.66 0.986793
Target:  5'- gCCGGGgcugGGCCUCGGUgAAGGuucuGCAGUGc -3'
miRNA:   3'- -GGCCU----UUGGGGUCG-UUCUu---CGUCAUc -5'
6461 3' -51.6 NC_001847.1 + 2421 0.66 0.986793
Target:  5'- cCCGaGggGCCCCccgcGGCGGccGGCAGg-- -3'
miRNA:   3'- -GGC-CuuUGGGG----UCGUUcuUCGUCauc -5'
6461 3' -51.6 NC_001847.1 + 23608 0.66 0.986793
Target:  5'- gCCGGGgcugGGCCUCGGUgAAGGuucuGCAGUGc -3'
miRNA:   3'- -GGCCU----UUGGGGUCG-UUCUu---CGUCAUc -5'
6461 3' -51.6 NC_001847.1 + 52849 0.66 0.986793
Target:  5'- gCCGGuuaacaccAGCUCCAGCAAGgcGUGGc-- -3'
miRNA:   3'- -GGCCu-------UUGGGGUCGUUCuuCGUCauc -5'
6461 3' -51.6 NC_001847.1 + 116226 0.66 0.985061
Target:  5'- aCGGGGccuGCUCCcGCGcAGGAGCAcGUGGu -3'
miRNA:   3'- gGCCUU---UGGGGuCGU-UCUUCGU-CAUC- -5'
6461 3' -51.6 NC_001847.1 + 76174 0.66 0.985061
Target:  5'- cCCGcGGAugCCCuGCGAGAcGCAa--- -3'
miRNA:   3'- -GGC-CUUugGGGuCGUUCUuCGUcauc -5'
6461 3' -51.6 NC_001847.1 + 59327 0.66 0.985061
Target:  5'- gCCGGcgGCgccguaccagCCCGGCAucGGggGCGGa-- -3'
miRNA:   3'- -GGCCuuUG----------GGGUCGU--UCuuCGUCauc -5'
6461 3' -51.6 NC_001847.1 + 48391 0.66 0.985061
Target:  5'- gCCGGGccgGGCCUCGGCGGcaAAGCGGg-- -3'
miRNA:   3'- -GGCCU---UUGGGGUCGUUc-UUCGUCauc -5'
6461 3' -51.6 NC_001847.1 + 24198 0.66 0.985061
Target:  5'- gCUGGugGCCaugaCGGCcAGGAGCAGgcGc -3'
miRNA:   3'- -GGCCuuUGGg---GUCGuUCUUCGUCauC- -5'
6461 3' -51.6 NC_001847.1 + 5277 0.66 0.985061
Target:  5'- uCCGGAGACCCgGGgAcGGggGUAcGgcGa -3'
miRNA:   3'- -GGCCUUUGGGgUCgU-UCuuCGU-CauC- -5'
6461 3' -51.6 NC_001847.1 + 80249 0.66 0.985061
Target:  5'- gCCGGGucgacggcguGCCgCAGCAGGGccuccuucaugaAGCGGUGc -3'
miRNA:   3'- -GGCCUu---------UGGgGUCGUUCU------------UCGUCAUc -5'
6461 3' -51.6 NC_001847.1 + 112749 0.66 0.985061
Target:  5'- gCGGGuuguccgucgcGACCCCGGCccgcGGggGCcucgucccAGUAGu -3'
miRNA:   3'- gGCCU-----------UUGGGGUCGu---UCuuCG--------UCAUC- -5'
6461 3' -51.6 NC_001847.1 + 108090 0.66 0.985061
Target:  5'- uCCGGAGACCCgGGgAcGGggGUAcGgcGa -3'
miRNA:   3'- -GGCCUUUGGGgUCgU-UCuuCGU-CauC- -5'
6461 3' -51.6 NC_001847.1 + 61408 0.66 0.985061
Target:  5'- uUGGAAcuGCCCUcGCGGGAGGCGc--- -3'
miRNA:   3'- gGCCUU--UGGGGuCGUUCUUCGUcauc -5'
6461 3' -51.6 NC_001847.1 + 10502 0.66 0.985061
Target:  5'- cCCGacGGCCCCgcgcugcugcgGGCcauGGAGCGGUGGa -3'
miRNA:   3'- -GGCcuUUGGGG-----------UCGuu-CUUCGUCAUC- -5'
6461 3' -51.6 NC_001847.1 + 104065 0.66 0.983941
Target:  5'- aCCGGccgcagcggcgcgccGAGcCCCCAGCGGuuggcGgcGCGGUGGc -3'
miRNA:   3'- -GGCC---------------UUU-GGGGUCGUU-----CuuCGUCAUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.