Results 21 - 40 of 257 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
6461 | 5' | -65.6 | NC_001847.1 | + | 78284 | 0.66 | 0.444007 |
Target: 5'- uGCuCGCCucugcgaGGcGGUgcucgggCGGCUGGGccGCCCCc -3' miRNA: 3'- gCG-GCGG-------CC-CCAa------GUCGACCC--CGGGG- -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 47896 | 0.66 | 0.444863 |
Target: 5'- cCGCgCGCCGGGGcgCAGCcGGuaCCagCCg -3' miRNA: 3'- -GCG-GCGGCCCCaaGUCGaCCccGG--GG- -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 34088 | 0.66 | 0.488796 |
Target: 5'- gGCC-CCGGGGccggccUCGGCgggugcgcaaauUGGGaCCCCg -3' miRNA: 3'- gCGGcGGCCCCa-----AGUCG------------ACCCcGGGG- -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 16059 | 0.66 | 0.488796 |
Target: 5'- gGCgGCCGcGGcGccUCuGCUGGGcGCCuCCa -3' miRNA: 3'- gCGgCGGC-CC-Ca-AGuCGACCC-CGG-GG- -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 40172 | 0.66 | 0.488796 |
Target: 5'- aGCCGCgGGGGcugcgcgCGGC-GGaacGGCCgCCg -3' miRNA: 3'- gCGGCGgCCCCaa-----GUCGaCC---CCGG-GG- -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 57221 | 0.66 | 0.479841 |
Target: 5'- gGCCGCCGGGGcUCGucGCcgagaGGuGcGCCaCCg -3' miRNA: 3'- gCGGCGGCCCCaAGU--CGa----CC-C-CGG-GG- -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 16617 | 0.66 | 0.487897 |
Target: 5'- gCGUgGUCuuuggggGGGGgcgcggCGGCUuugccgucGGGGCCCCg -3' miRNA: 3'- -GCGgCGG-------CCCCaa----GUCGA--------CCCCGGGG- -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 116389 | 0.66 | 0.479841 |
Target: 5'- nCGCCuuaGCCGcGGcggCGGCgcucuGGGCCCCg -3' miRNA: 3'- -GCGG---CGGCcCCaa-GUCGac---CCCGGGG- -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 125877 | 0.66 | 0.479841 |
Target: 5'- gGCUggGCUGGGGUgggcUgGGCUGGGGUg-- -3' miRNA: 3'- gCGG--CGGCCCCA----AgUCGACCCCGggg -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 57398 | 0.66 | 0.488796 |
Target: 5'- -aCCGCUGGGGUaggUCcgGGC--GGGCCUCg -3' miRNA: 3'- gcGGCGGCCCCA---AG--UCGacCCCGGGG- -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 108595 | 0.66 | 0.462178 |
Target: 5'- gGCUGUCGGGGcUCauuugcaugaaAGCaUGGccgaacgcccccGGCCCCg -3' miRNA: 3'- gCGGCGGCCCCaAG-----------UCG-ACC------------CCGGGG- -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 43601 | 0.66 | 0.479841 |
Target: 5'- uGgCGCUGGGGccgguGCUGGccacGGCCCUc -3' miRNA: 3'- gCgGCGGCCCCaagu-CGACC----CCGGGG- -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 46214 | 0.66 | 0.448297 |
Target: 5'- cCGCCGCCGGGc--CGGCcgcgGGGaaaucucgcaccaguGCCUCg -3' miRNA: 3'- -GCGGCGGCCCcaaGUCGa---CCC---------------CGGGG- -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 100647 | 0.66 | 0.443151 |
Target: 5'- gCGgCGCCaGGGccgcgcugcugCGGCggGGGGUCCCc -3' miRNA: 3'- -GCgGCGGcCCCaa---------GUCGa-CCCCGGGG- -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 129150 | 0.66 | 0.488796 |
Target: 5'- gGUCGCCGuuGUUCGGCUGcc-CCCCg -3' miRNA: 3'- gCGGCGGCccCAAGUCGACcccGGGG- -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 125997 | 0.66 | 0.43974 |
Target: 5'- gGCUggGCUGGGGUg-GGCUGGgcuaaccuugcggcaGGUCCCu -3' miRNA: 3'- gCGG--CGGCCCCAagUCGACC---------------CCGGGG- -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 83240 | 0.66 | 0.442297 |
Target: 5'- cCGCgGCCGGGGcggcggccgaaagcgCGGCgGGGGCg-- -3' miRNA: 3'- -GCGgCGGCCCCaa-------------GUCGaCCCCGggg -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 92676 | 0.66 | 0.453475 |
Target: 5'- gCGCCGCCccaccagcaccuucaGGGGgacgguguuaagCAGCUGGcagaGCCUCg -3' miRNA: 3'- -GCGGCGG---------------CCCCaa----------GUCGACCc---CGGGG- -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 41816 | 0.66 | 0.470968 |
Target: 5'- -aCCGCgCGGGcGggCGGC-GcGGGUCCCa -3' miRNA: 3'- gcGGCG-GCCC-CaaGUCGaC-CCCGGGG- -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 122204 | 0.66 | 0.488796 |
Target: 5'- cCGCCacacuaGCCGGGGccgGGUgcccucaGGGGCgCCCa -3' miRNA: 3'- -GCGG------CGGCCCCaagUCGa------CCCCG-GGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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