miRNA display CGI


Results 41 - 60 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6461 5' -65.6 NC_001847.1 + 58731 0.66 0.488796
Target:  5'- cCGCCG-CGGGGUgcccccgccgCGGCccccGGcGCCCCc -3'
miRNA:   3'- -GCGGCgGCCCCAa---------GUCGa---CCcCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 125877 0.66 0.479841
Target:  5'- gGCUggGCUGGGGUgggcUgGGCUGGGGUg-- -3'
miRNA:   3'- gCGG--CGGCCCCA----AgUCGACCCCGggg -5'
6461 5' -65.6 NC_001847.1 + 19265 0.66 0.488796
Target:  5'- gCGCgaGCCGGcGGcgCAGCgucugugcgGcGGGCCgCCa -3'
miRNA:   3'- -GCGg-CGGCC-CCaaGUCGa--------C-CCCGG-GG- -5'
6461 5' -65.6 NC_001847.1 + 125907 0.66 0.479841
Target:  5'- gGCUggGCUGGGGUgggcUgGGCUGGGGUg-- -3'
miRNA:   3'- gCGG--CGGCCCCA----AgUCGACCCCGggg -5'
6461 5' -65.6 NC_001847.1 + 64455 0.66 0.479841
Target:  5'- cCGCCGCCGcccgcggCGGCgcggGGGGCCg- -3'
miRNA:   3'- -GCGGCGGCcccaa--GUCGa---CCCCGGgg -5'
6461 5' -65.6 NC_001847.1 + 29902 0.66 0.470968
Target:  5'- gGCCcuGCCGGccg-CcGCggGGGGCCCCu -3'
miRNA:   3'- gCGG--CGGCCccaaGuCGa-CCCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 50310 0.66 0.470968
Target:  5'- aGCUGCgGgGGGUUguGCgcacgcaGGCCCCc -3'
miRNA:   3'- gCGGCGgC-CCCAAguCGacc----CCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 53711 0.66 0.444863
Target:  5'- gCGCCGCCGGcGGcUC-GC-GGGGCg-- -3'
miRNA:   3'- -GCGGCGGCC-CCaAGuCGaCCCCGggg -5'
6461 5' -65.6 NC_001847.1 + 54465 0.66 0.436343
Target:  5'- cCGCCGCCGGcGcgCAGCcGuucGGCUCCc -3'
miRNA:   3'- -GCGGCGGCCcCaaGUCGaCc--CCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 82548 0.66 0.444863
Target:  5'- gCGCCGcCCGcGGGcUCGGCcucGGCCgCCg -3'
miRNA:   3'- -GCGGC-GGC-CCCaAGUCGaccCCGG-GG- -5'
6461 5' -65.6 NC_001847.1 + 5782 0.66 0.462178
Target:  5'- gGCUGUCGGGGcUCauuugcaugaaAGCaUGGccgaacgcccccGGCCCCg -3'
miRNA:   3'- gCGGCGGCCCCaAG-----------UCG-ACC------------CCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 73213 0.66 0.450882
Target:  5'- gCGCCGCCgcugacgcggaggaGGGGggCGGCggcgcGGGcGCgCUCg -3'
miRNA:   3'- -GCGGCGG--------------CCCCaaGUCGa----CCC-CG-GGG- -5'
6461 5' -65.6 NC_001847.1 + 107637 0.66 0.444863
Target:  5'- cCGCCGCCGcGGcggCGGCcGaGGCCUCu -3'
miRNA:   3'- -GCGGCGGCcCCaa-GUCGaCcCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 13106 0.66 0.470968
Target:  5'- aCGCCGCCGuccuccUCGGCUGcGGCCgCg -3'
miRNA:   3'- -GCGGCGGCccca--AGUCGACcCCGGgG- -5'
6461 5' -65.6 NC_001847.1 + 60010 0.66 0.462178
Target:  5'- -aCCGCCGGccc-CGGC-GGGGCCCg -3'
miRNA:   3'- gcGGCGGCCccaaGUCGaCCCCGGGg -5'
6461 5' -65.6 NC_001847.1 + 90326 0.66 0.462178
Target:  5'- gGCCGCCGGGGccg----GGGGCgCa -3'
miRNA:   3'- gCGGCGGCCCCaagucgaCCCCGgGg -5'
6461 5' -65.6 NC_001847.1 + 24326 0.66 0.462178
Target:  5'- uGcCCGCgCGGGGgcgaugUCcaAGUggagggGGGGCCCg -3'
miRNA:   3'- gC-GGCG-GCCCCa-----AG--UCGa-----CCCCGGGg -5'
6461 5' -65.6 NC_001847.1 + 124657 0.66 0.462178
Target:  5'- gGCCGUCGGGGaagccCAGCUc-GGCCUg -3'
miRNA:   3'- gCGGCGGCCCCaa---GUCGAccCCGGGg -5'
6461 5' -65.6 NC_001847.1 + 50347 0.66 0.479841
Target:  5'- uGCCGCUaGGGUaaAGCUGGcgcuGGCCg- -3'
miRNA:   3'- gCGGCGGcCCCAagUCGACC----CCGGgg -5'
6461 5' -65.6 NC_001847.1 + 56868 0.66 0.479841
Target:  5'- gGCgGCCcGGGcgCGGCcacGGGCCCg -3'
miRNA:   3'- gCGgCGGcCCCaaGUCGac-CCCGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.