miRNA display CGI


Results 61 - 80 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6461 5' -65.6 NC_001847.1 + 21503 0.66 0.470968
Target:  5'- -uUUGCCGGGcGcgccUCGGCgGGGGCCgCg -3'
miRNA:   3'- gcGGCGGCCC-Ca---AGUCGaCCCCGGgG- -5'
6461 5' -65.6 NC_001847.1 + 15073 0.66 0.469203
Target:  5'- gGCgGcCCGGGGaucgccugcggCAGC-GGGGCCgCg -3'
miRNA:   3'- gCGgC-GGCCCCaa---------GUCGaCCCCGGgG- -5'
6461 5' -65.6 NC_001847.1 + 35185 0.66 0.462178
Target:  5'- aCGCgGCCuucgaGGaGGagcgcgcgCGGCUGGGcGCCCUg -3'
miRNA:   3'- -GCGgCGG-----CC-CCaa------GUCGACCC-CGGGG- -5'
6461 5' -65.6 NC_001847.1 + 127139 0.66 0.462178
Target:  5'- uGcCCGCgCGGGGgcgaugUCcaAGUggagggGGGGCCCg -3'
miRNA:   3'- gC-GGCG-GCCCCa-----AG--UCGa-----CCCCGGGg -5'
6461 5' -65.6 NC_001847.1 + 7774 0.67 0.40323
Target:  5'- gGCCGuuGGuGccgaGGCUcGGGCCCCg -3'
miRNA:   3'- gCGGCggCC-CcaagUCGAcCCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 31956 0.67 0.387282
Target:  5'- aGCCuGCCGcGG--CGGCgGcGGGCCCCg -3'
miRNA:   3'- gCGG-CGGCcCCaaGUCGaC-CCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 89254 0.67 0.395204
Target:  5'- cCGgCGCa--GGUccUCGGCuuucUGGGGCCCCa -3'
miRNA:   3'- -GCgGCGgccCCA--AGUCG----ACCCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 30056 0.67 0.395204
Target:  5'- aCGuuGCCGGcgcGGUggcgCGGCUGGGaGUgCUg -3'
miRNA:   3'- -GCggCGGCC---CCAa---GUCGACCC-CGgGG- -5'
6461 5' -65.6 NC_001847.1 + 59162 0.67 0.40323
Target:  5'- gCGCCGCUuggccaGGGggCGGCggucgagGGGGCCg- -3'
miRNA:   3'- -GCGGCGGc-----CCCaaGUCGa------CCCCGGgg -5'
6461 5' -65.6 NC_001847.1 + 125757 0.67 0.40323
Target:  5'- gGCUggGCUGGGGUg-GGCUGGGGUg-- -3'
miRNA:   3'- gCGG--CGGCCCCAagUCGACCCCGggg -5'
6461 5' -65.6 NC_001847.1 + 125817 0.67 0.40323
Target:  5'- gGCUggGCUGGGGUg-GGCUGGGGUg-- -3'
miRNA:   3'- gCGG--CGGCCCCAagUCGACCCCGggg -5'
6461 5' -65.6 NC_001847.1 + 132375 0.67 0.411359
Target:  5'- cCGCCGgCGGGGgcgcCGGCgccGGcGCCgCCg -3'
miRNA:   3'- -GCGGCgGCCCCaa--GUCGac-CC-CGG-GG- -5'
6461 5' -65.6 NC_001847.1 + 132715 0.67 0.427917
Target:  5'- gGCCcuGCCGGccg-CcGCgGGGGCCCCu -3'
miRNA:   3'- gCGG--CGGCCccaaGuCGaCCCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 99798 0.67 0.427917
Target:  5'- gCGCCuGUggugCGGGGUcggagCGGCcgGGGGCCgCu -3'
miRNA:   3'- -GCGG-CG----GCCCCAa----GUCGa-CCCCGGgG- -5'
6461 5' -65.6 NC_001847.1 + 120015 0.67 0.419589
Target:  5'- gCGCUGCCcGGGUgagCGGCcuaGGCCCUc -3'
miRNA:   3'- -GCGGCGGcCCCAa--GUCGaccCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 88418 0.67 0.419589
Target:  5'- gGCUGUgugugCGGGGUcucgcuuuauUCGGCgugggccGcGGGCCCCg -3'
miRNA:   3'- gCGGCG-----GCCCCA----------AGUCGa------C-CCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 11169 0.67 0.427917
Target:  5'- cCGgCGUCGGG----AGCUGGGGCUgCCg -3'
miRNA:   3'- -GCgGCGGCCCcaagUCGACCCCGG-GG- -5'
6461 5' -65.6 NC_001847.1 + 81743 0.67 0.419589
Target:  5'- gGCCGUgcGGGUUCAGcCUGcGGCgCCg -3'
miRNA:   3'- gCGGCGgcCCCAAGUC-GACcCCGgGG- -5'
6461 5' -65.6 NC_001847.1 + 99319 0.67 0.414639
Target:  5'- cCGcCCGCCGGGGgccgaAGCUaaagggugggcggccGGgcggaucuuGGCCCCu -3'
miRNA:   3'- -GC-GGCGGCCCCaag--UCGA---------------CC---------CCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 38856 0.67 0.411359
Target:  5'- cCGCCGCCGGccccgaGUaCGGCcccGGuuccGGCCCCg -3'
miRNA:   3'- -GCGGCGGCCc-----CAaGUCGa--CC----CCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.