miRNA display CGI


Results 81 - 100 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6461 5' -65.6 NC_001847.1 + 98151 0.67 0.395204
Target:  5'- gCGCCGCCGccGcUCGGC-GcGGGCCCg -3'
miRNA:   3'- -GCGGCGGCccCaAGUCGaC-CCCGGGg -5'
6461 5' -65.6 NC_001847.1 + 32319 0.67 0.400007
Target:  5'- gGUCGCaGGGGgcccgcgcggcgCGGCgcggagGGGGCCCa -3'
miRNA:   3'- gCGGCGgCCCCaa----------GUCGa-----CCCCGGGg -5'
6461 5' -65.6 NC_001847.1 + 23004 0.67 0.40323
Target:  5'- gGCUggGCUGGGGUg-GGCUGGGGUg-- -3'
miRNA:   3'- gCGG--CGGCCCCAagUCGACCCCGggg -5'
6461 5' -65.6 NC_001847.1 + 86498 0.67 0.411359
Target:  5'- gGCUGCgGGGG--CGGC-GGcGCCCCg -3'
miRNA:   3'- gCGGCGgCCCCaaGUCGaCCcCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 13462 0.67 0.411359
Target:  5'- aGCCGagcCCGGGGuUUCGGUcgcgGGcuuGGCCUCg -3'
miRNA:   3'- gCGGC---GGCCCC-AAGUCGa---CC---CCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 2551 0.67 0.411359
Target:  5'- cCGCCGCCGGGc--CGG--GGcGGCCCUc -3'
miRNA:   3'- -GCGGCGGCCCcaaGUCgaCC-CCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 29562 0.67 0.411359
Target:  5'- cCGCCGgCGGGGgcgcCGGCgccGGcGCCgCCg -3'
miRNA:   3'- -GCGGCgGCCCCaa--GUCGac-CC-CGG-GG- -5'
6461 5' -65.6 NC_001847.1 + 62349 0.67 0.416285
Target:  5'- aGCCcgaaGCCGGGGUgcagccccgugcgCAGCUGGuGCgUCa -3'
miRNA:   3'- gCGG----CGGCCCCAa------------GUCGACCcCGgGG- -5'
6461 5' -65.6 NC_001847.1 + 86979 0.67 0.419589
Target:  5'- aCGCCGCCGGccGGgcCGGCgcgcgccGGCCCg -3'
miRNA:   3'- -GCGGCGGCC--CCaaGUCGacc----CCGGGg -5'
6461 5' -65.6 NC_001847.1 + 90854 0.67 0.419589
Target:  5'- gCGCCccgggGCCGGGGcuggugUCgaGGCcGGGGCCg- -3'
miRNA:   3'- -GCGG-----CGGCCCCa-----AG--UCGaCCCCGGgg -5'
6461 5' -65.6 NC_001847.1 + 33009 0.67 0.40323
Target:  5'- aGCgGCCGGGGggCGcGC-GGGGCg-- -3'
miRNA:   3'- gCGgCGGCCCCaaGU-CGaCCCCGggg -5'
6461 5' -65.6 NC_001847.1 + 125757 0.67 0.40323
Target:  5'- gGCUggGCUGGGGUg-GGCUGGGGUg-- -3'
miRNA:   3'- gCGG--CGGCCCCAagUCGACCCCGggg -5'
6461 5' -65.6 NC_001847.1 + 30056 0.67 0.395204
Target:  5'- aCGuuGCCGGcgcGGUggcgCGGCUGGGaGUgCUg -3'
miRNA:   3'- -GCggCGGCC---CCAa---GUCGACCC-CGgGG- -5'
6461 5' -65.6 NC_001847.1 + 89254 0.67 0.395204
Target:  5'- cCGgCGCa--GGUccUCGGCuuucUGGGGCCCCa -3'
miRNA:   3'- -GCgGCGgccCCA--AGUCG----ACCCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 31956 0.67 0.387282
Target:  5'- aGCCuGCCGcGG--CGGCgGcGGGCCCCg -3'
miRNA:   3'- gCGG-CGGCcCCaaGUCGaC-CCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 113019 0.67 0.379465
Target:  5'- cCGCCGCCGGGcccaGggCGcgcccGCUGucGCCCCc -3'
miRNA:   3'- -GCGGCGGCCC----CaaGU-----CGACccCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 106640 0.67 0.378689
Target:  5'- gCGCUGCCGGGccacgccucgccaGaaggcgUCAGCaGcGGGCCCUc -3'
miRNA:   3'- -GCGGCGGCCC-------------Ca-----AGUCGaC-CCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 116359 0.67 0.419589
Target:  5'- cCGCCGCCGcGGaGcUCGcGCUGucGGCCgCCg -3'
miRNA:   3'- -GCGGCGGC-CC-CaAGU-CGACc-CCGG-GG- -5'
6461 5' -65.6 NC_001847.1 + 3149 0.67 0.427917
Target:  5'- gCGgCGCCGGcGGcgCGGC--GGGCCgCCu -3'
miRNA:   3'- -GCgGCGGCC-CCaaGUCGacCCCGG-GG- -5'
6461 5' -65.6 NC_001847.1 + 78078 0.67 0.427917
Target:  5'- cCGCCGCgcUGGGGUUgAGCUuagccgccucGGCCCa -3'
miRNA:   3'- -GCGGCG--GCCCCAAgUCGAcc--------CCGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.