miRNA display CGI


Results 101 - 120 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6461 5' -65.6 NC_001847.1 + 110834 0.67 0.379465
Target:  5'- cCGCuCGCUGGGcaUCGGCUuccaGGGCCUg -3'
miRNA:   3'- -GCG-GCGGCCCcaAGUCGAc---CCCGGGg -5'
6461 5' -65.6 NC_001847.1 + 10206 0.67 0.379465
Target:  5'- cCGCCGCCGGGcccaGggCGcgcccGCUGucGCCCCc -3'
miRNA:   3'- -GCGGCGGCCC----CaaGU-----CGACccCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 106640 0.67 0.378689
Target:  5'- gCGCUGCCGGGccacgccucgccaGaaggcgUCAGCaGcGGGCCCUc -3'
miRNA:   3'- -GCGGCGGCCC-------------Ca-----AGUCGaC-CCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 113019 0.67 0.379465
Target:  5'- cCGCCGCCGGGcccaGggCGcgcccGCUGucGCCCCc -3'
miRNA:   3'- -GCGGCGGCCC----CaaGU-----CGACccCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 31956 0.67 0.387282
Target:  5'- aGCCuGCCGcGG--CGGCgGcGGGCCCCg -3'
miRNA:   3'- gCGG-CGGCcCCaaGUCGaC-CCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 89254 0.67 0.395204
Target:  5'- cCGgCGCa--GGUccUCGGCuuucUGGGGCCCCa -3'
miRNA:   3'- -GCgGCGgccCCA--AGUCG----ACCCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 59162 0.67 0.40323
Target:  5'- gCGCCGCUuggccaGGGggCGGCggucgagGGGGCCg- -3'
miRNA:   3'- -GCGGCGGc-----CCCaaGUCGa------CCCCGGgg -5'
6461 5' -65.6 NC_001847.1 + 125757 0.67 0.40323
Target:  5'- gGCUggGCUGGGGUg-GGCUGGGGUg-- -3'
miRNA:   3'- gCGG--CGGCCCCAagUCGACCCCGggg -5'
6461 5' -65.6 NC_001847.1 + 95536 0.67 0.387282
Target:  5'- uGCCccugggGCUGGGGccgCGccgcagcagcGCUGGGGCCaCCu -3'
miRNA:   3'- gCGG------CGGCCCCaa-GU----------CGACCCCGG-GG- -5'
6461 5' -65.6 NC_001847.1 + 60147 0.67 0.387282
Target:  5'- cCGcCCGCCGGcGGacUgAGcCUGGcGCCCCg -3'
miRNA:   3'- -GC-GGCGGCC-CCa-AgUC-GACCcCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 95640 0.67 0.394407
Target:  5'- gGCCGCucuggcgCGGGGggCGGC-GcGGGCCgCu -3'
miRNA:   3'- gCGGCG-------GCCCCaaGUCGaC-CCCGGgG- -5'
6461 5' -65.6 NC_001847.1 + 95694 0.67 0.394407
Target:  5'- gGCCGCucuggcgCGGGGggCGGC-GcGGGCCgCu -3'
miRNA:   3'- gCGGCG-------GCCCCaaGUCGaC-CCCGGgG- -5'
6461 5' -65.6 NC_001847.1 + 95748 0.67 0.394407
Target:  5'- gGCCGCucuggcgCGGGGggCGGC-GcGGGCCgCu -3'
miRNA:   3'- gCGGCG-------GCCCCaaGUCGaC-CCCGGgG- -5'
6461 5' -65.6 NC_001847.1 + 30917 0.68 0.334828
Target:  5'- gCGCgCGCCGGcGGUgCGGC-GGaGGCCUUc -3'
miRNA:   3'- -GCG-GCGGCC-CCAaGUCGaCC-CCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 73857 0.68 0.341994
Target:  5'- aCGCCGCCgcggugcgcGGGGcgcgUCAGUUccgccGGcGCCCCg -3'
miRNA:   3'- -GCGGCGG---------CCCCa---AGUCGAc----CC-CGGGG- -5'
6461 5' -65.6 NC_001847.1 + 56133 0.68 0.341994
Target:  5'- aCGgCGCUGGGc-UCGGC-GGGGCUCUa -3'
miRNA:   3'- -GCgGCGGCCCcaAGUCGaCCCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 132012 0.68 0.334828
Target:  5'- gCGCCGCCGGGcucccgGUgcucUCGGCcgcgGcGGGCCgCg -3'
miRNA:   3'- -GCGGCGGCCC------CA----AGUCGa---C-CCCGGgG- -5'
6461 5' -65.6 NC_001847.1 + 18848 0.68 0.341994
Target:  5'- gCGCCGCaCGGG--UCAGCgGGGcacgcuGCCUCg -3'
miRNA:   3'- -GCGGCG-GCCCcaAGUCGaCCC------CGGGG- -5'
6461 5' -65.6 NC_001847.1 + 8626 0.68 0.34927
Target:  5'- -cCCGCCGGGGgagCGGCcGcugcggacucGGGCgCCCa -3'
miRNA:   3'- gcGGCGGCCCCaa-GUCGaC----------CCCG-GGG- -5'
6461 5' -65.6 NC_001847.1 + 13150 0.68 0.334828
Target:  5'- cCGCgGCCGGcGGUUgGGCUGcuGGCagCCa -3'
miRNA:   3'- -GCGgCGGCC-CCAAgUCGACc-CCGg-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.