miRNA display CGI


Results 21 - 40 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6461 5' -65.6 NC_001847.1 + 130232 0.76 0.111816
Target:  5'- uGCCGCCGGcgcggucGGUgucguucgCAGCggcgcgGGGGCCCUg -3'
miRNA:   3'- gCGGCGGCC-------CCAa-------GUCGa-----CCCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 105115 0.75 0.114893
Target:  5'- gGCCGCCGGG---CGGCauGGGCCCCa -3'
miRNA:   3'- gCGGCGGCCCcaaGUCGacCCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 53875 0.75 0.12069
Target:  5'- cCGaCCGCCGcGGGggCGGC--GGGCCCCc -3'
miRNA:   3'- -GC-GGCGGC-CCCaaGUCGacCCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 2302 0.75 0.114893
Target:  5'- gGCCGCCGGG---CGGCauGGGCCCCa -3'
miRNA:   3'- gCGGCGGCCCcaaGUCGacCCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 50109 0.75 0.117758
Target:  5'- aGCUGCUGGGGgccgGGCUGGGGCUg- -3'
miRNA:   3'- gCGGCGGCCCCaag-UCGACCCCGGgg -5'
6461 5' -65.6 NC_001847.1 + 113539 0.75 0.133107
Target:  5'- gCGCCGCCagcgaguuuaGGGG---GGC-GGGGCCCCg -3'
miRNA:   3'- -GCGGCGG----------CCCCaagUCGaCCCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 46334 0.75 0.114893
Target:  5'- gGCCGCCcgcGGGGccgcgUCGGCggcaucggGGGGCUCCu -3'
miRNA:   3'- gCGGCGG---CCCCa----AGUCGa-------CCCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 10726 0.75 0.133107
Target:  5'- gCGCCGCCagcgaguuuaGGGG---GGC-GGGGCCCCg -3'
miRNA:   3'- -GCGGCGG----------CCCCaagUCGaCCCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 105792 0.75 0.117758
Target:  5'- gCGCCGCCGGGGccgCGcGCUGGaGCCgCg -3'
miRNA:   3'- -GCGGCGGCCCCaa-GU-CGACCcCGGgG- -5'
6461 5' -65.6 NC_001847.1 + 29510 0.74 0.15395
Target:  5'- cCGCCGgCGGaGGUgccggcgCGGCUGGcGGCCgCg -3'
miRNA:   3'- -GCGGCgGCC-CCAa------GUCGACC-CCGGgG- -5'
6461 5' -65.6 NC_001847.1 + 100866 0.74 0.139749
Target:  5'- gGcCCGCCGGGGgUCGGCggcaGGGGCgCg -3'
miRNA:   3'- gC-GGCGGCCCCaAGUCGa---CCCCGgGg -5'
6461 5' -65.6 NC_001847.1 + 132323 0.74 0.15395
Target:  5'- cCGCCGgCGGaGGUgccggcgCGGCUGGcGGCCgCg -3'
miRNA:   3'- -GCGGCgGCC-CCAa------GUCGACC-CCGGgG- -5'
6461 5' -65.6 NC_001847.1 + 39385 0.73 0.161531
Target:  5'- aCGCCGUCGGGGagcCGGCgccggccGGGCUCCu -3'
miRNA:   3'- -GCGGCGGCCCCaa-GUCGac-----CCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 120031 0.73 0.181971
Target:  5'- cCGCCGCCGucaGGGccgUCAGCaUGagcgcGGCCCCg -3'
miRNA:   3'- -GCGGCGGC---CCCa--AGUCG-ACc----CCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 99063 0.73 0.173121
Target:  5'- cCGCCaggcCCGGGGccgccucUUCGuGCUGGGGCCUg -3'
miRNA:   3'- -GCGGc---GGCCCC-------AAGU-CGACCCCGGGg -5'
6461 5' -65.6 NC_001847.1 + 2980 0.73 0.165446
Target:  5'- gCGCCGCCGGGGccggcGCUGGaGCCgCg -3'
miRNA:   3'- -GCGGCGGCCCCaagu-CGACCcCGGgG- -5'
6461 5' -65.6 NC_001847.1 + 123549 0.73 0.173533
Target:  5'- gGCCGCugcgaaCGGGGcUUgGGCcGGGGCCgCCg -3'
miRNA:   3'- gCGGCG------GCCCC-AAgUCGaCCCCGG-GG- -5'
6461 5' -65.6 NC_001847.1 + 14445 0.73 0.161531
Target:  5'- aCGgCGCCGGGGUgcgCGGCcGcGGCCUCu -3'
miRNA:   3'- -GCgGCGGCCCCAa--GUCGaCcCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 104826 0.73 0.173533
Target:  5'- cCGCCGCCGGGGg--GGC-GGGcGUCCg -3'
miRNA:   3'- -GCGGCGGCCCCaagUCGaCCC-CGGGg -5'
6461 5' -65.6 NC_001847.1 + 9811 0.73 0.177708
Target:  5'- gGCCGCUGGcGUUCAGCgc-GGCUCCg -3'
miRNA:   3'- gCGGCGGCCcCAAGUCGaccCCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.