Results 41 - 60 of 257 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
6461 | 5' | -65.6 | NC_001847.1 | + | 32902 | 0.72 | 0.186325 |
Target: 5'- gGCCGgCGGGGa--AGCcGGGGCCgCg -3' miRNA: 3'- gCGGCgGCCCCaagUCGaCCCCGGgG- -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 38496 | 0.72 | 0.195308 |
Target: 5'- aCGUCGCCGGGGggCGGCgc-GGUCgCCg -3' miRNA: 3'- -GCGGCGGCCCCaaGUCGaccCCGG-GG- -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 22104 | 0.72 | 0.19994 |
Target: 5'- gGCgCGCCGGGGgcgaCAGC-GGGcGCgCCCu -3' miRNA: 3'- gCG-GCGGCCCCaa--GUCGaCCC-CG-GGG- -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 34457 | 0.72 | 0.204667 |
Target: 5'- gGCCGCCuGGGUgcgagaaAGCcuccUGGGGaCCCCc -3' miRNA: 3'- gCGGCGGcCCCAag-----UCG----ACCCC-GGGG- -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 124917 | 0.72 | 0.19994 |
Target: 5'- gGCgCGCCGGGGgcgaCAGC-GGGcGCgCCCu -3' miRNA: 3'- gCG-GCGGCCCCaa--GUCGaCCC-CG-GGG- -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 85101 | 0.72 | 0.195308 |
Target: 5'- gGCCGCCGGccaGGUUgaucaucaCGGCgcgcccGGGGCCCa -3' miRNA: 3'- gCGGCGGCC---CCAA--------GUCGa-----CCCCGGGg -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 70764 | 0.72 | 0.19077 |
Target: 5'- gGCCGuuGGGGacCGGCuaguguuuuUGGaGGCCCUa -3' miRNA: 3'- gCGGCggCCCCaaGUCG---------ACC-CCGGGG- -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 134380 | 0.72 | 0.19077 |
Target: 5'- gCGCCGCCGGcGGcgggcCGGCcucgcccuaggGGGGCCCg -3' miRNA: 3'- -GCGGCGGCC-CCaa---GUCGa----------CCCCGGGg -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 31567 | 0.72 | 0.19077 |
Target: 5'- gCGCCGCCGGcGGcgggcCGGCcucgcccuaggGGGGCCCg -3' miRNA: 3'- -GCGGCGGCC-CCaa---GUCGa----------CCCCGGGg -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 23281 | 0.71 | 0.231893 |
Target: 5'- gCGCUGCaCGGGGgggCggagcacaggagcucGGgUGGGGUCCCg -3' miRNA: 3'- -GCGGCG-GCCCCaa-G---------------UCgACCCCGGGG- -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 44350 | 0.71 | 0.224554 |
Target: 5'- aCGCgCGcCCGGGGcu--GCUGaacGGGCCCCu -3' miRNA: 3'- -GCG-GC-GGCCCCaaguCGAC---CCCGGGG- -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 54502 | 0.71 | 0.219433 |
Target: 5'- gCGCCgggGCCGGGGUggggggCGGUggggcGGGGCCguCCg -3' miRNA: 3'- -GCGG---CGGCCCCAa-----GUCGa----CCCCGG--GG- -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 100148 | 0.71 | 0.232958 |
Target: 5'- cCGCgGCCGGGaagagggccgaCAGCgcgGGGGCCgCCa -3' miRNA: 3'- -GCGgCGGCCCcaa--------GUCGa--CCCCGG-GG- -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 101078 | 0.71 | 0.229776 |
Target: 5'- cCGCCGCgGGGGccgggUCGGC-GGGGCg-- -3' miRNA: 3'- -GCGGCGgCCCCa----AGUCGaCCCCGggg -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 119102 | 0.71 | 0.2351 |
Target: 5'- gGCCGCCGcGGggCGGCggggcaggcaUGGGGCCg- -3' miRNA: 3'- gCGGCGGCcCCaaGUCG----------ACCCCGGgg -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 126094 | 0.71 | 0.231893 |
Target: 5'- gCGCUGCaCGGGGgggCggagcacaggagcucGGgUGGGGUCCCg -3' miRNA: 3'- -GCGGCG-GCCCCaa-G---------------UCgACCCCGGGG- -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 13546 | 0.71 | 0.228198 |
Target: 5'- cCGCCGCCGGGG--CGGCgcggUGGGuugcauugccaaauGCCCUu -3' miRNA: 3'- -GCGGCGGCCCCaaGUCG----ACCC--------------CGGGG- -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 118419 | 0.71 | 0.219433 |
Target: 5'- cCGUCGCCuGcGGUcUCGGCgccgUGGGGCUCCu -3' miRNA: 3'- -GCGGCGGcC-CCA-AGUCG----ACCCCGGGG- -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 100950 | 0.71 | 0.2351 |
Target: 5'- aGCCGCCGcGGUaaCAGC-GGGGCUCg -3' miRNA: 3'- gCGGCGGCcCCAa-GUCGaCCCCGGGg -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 27213 | 0.71 | 0.246058 |
Target: 5'- gGCgCGCCGGGGcgcUCgAGCUGcGGGUCgCa -3' miRNA: 3'- gCG-GCGGCCCCa--AG-UCGAC-CCCGGgG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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