Results 61 - 80 of 257 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
6461 | 5' | -65.6 | NC_001847.1 | + | 54502 | 0.71 | 0.219433 |
Target: 5'- gCGCCgggGCCGGGGUggggggCGGUggggcGGGGCCguCCg -3' miRNA: 3'- -GCGG---CGGCCCCAa-----GUCGa----CCCCGG--GG- -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 100950 | 0.71 | 0.2351 |
Target: 5'- aGCCGCCGcGGUaaCAGC-GGGGCUCg -3' miRNA: 3'- gCGGCGGCcCCAa-GUCGaCCCCGGGg -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 45518 | 0.71 | 0.214413 |
Target: 5'- cCGCCGCCGGGcGgcgCGGaC-GGGGCCgugCCg -3' miRNA: 3'- -GCGGCGGCCC-Caa-GUC-GaCCCCGG---GG- -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 74144 | 0.71 | 0.212926 |
Target: 5'- uGgCGCCGGGGcgaaUgauggcggcgccucUCGGCgUGGGGCCCa -3' miRNA: 3'- gCgGCGGCCCC----A--------------AGUCG-ACCCCGGGg -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 126094 | 0.71 | 0.231893 |
Target: 5'- gCGCUGCaCGGGGgggCggagcacaggagcucGGgUGGGGUCCCg -3' miRNA: 3'- -GCGGCG-GCCCCaa-G---------------UCgACCCCGGGG- -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 23281 | 0.71 | 0.231893 |
Target: 5'- gCGCUGCaCGGGGgggCggagcacaggagcucGGgUGGGGUCCCg -3' miRNA: 3'- -GCGGCG-GCCCCaa-G---------------UCgACCCCGGGG- -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 101078 | 0.71 | 0.229776 |
Target: 5'- cCGCCGCgGGGGccgggUCGGC-GGGGCg-- -3' miRNA: 3'- -GCGGCGgCCCCa----AGUCGaCCCCGggg -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 115687 | 0.7 | 0.263285 |
Target: 5'- gGCUGCgCGGGGgcgagagcCGGCUGcGGCCCg -3' miRNA: 3'- gCGGCG-GCCCCaa------GUCGACcCCGGGg -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 63119 | 0.7 | 0.263285 |
Target: 5'- cCGCCGCCGcgcacGGG-UCGGUUGugcaccaggucGGGCCCg -3' miRNA: 3'- -GCGGCGGC-----CCCaAGUCGAC-----------CCCGGGg -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 30992 | 0.7 | 0.269241 |
Target: 5'- gGCCGCgCaGGGcgCGgcGCUGGGGCUCg -3' miRNA: 3'- gCGGCG-GcCCCaaGU--CGACCCCGGGg -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 30352 | 0.7 | 0.281479 |
Target: 5'- cCGCUGcCCGGGGaggcGCUGGcGGCgCCg -3' miRNA: 3'- -GCGGC-GGCCCCaaguCGACC-CCGgGG- -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 126243 | 0.7 | 0.257436 |
Target: 5'- gGgCGuCCGGGGUcgUCGGC-GGGGCgUCCg -3' miRNA: 3'- gCgGC-GGCCCCA--AGUCGaCCCCG-GGG- -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 23430 | 0.7 | 0.257436 |
Target: 5'- gGgCGuCCGGGGUcgUCGGC-GGGGCgUCCg -3' miRNA: 3'- gCgGC-GGCCCCA--AGUCGaCCCCG-GGG- -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 75871 | 0.7 | 0.257436 |
Target: 5'- cCGCCGCCGGGGcUCgagAGCcaaaucauGGCCCUg -3' miRNA: 3'- -GCGGCGGCCCCaAG---UCGacc-----CCGGGG- -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 2063 | 0.7 | 0.263285 |
Target: 5'- gCGCCGCCGcagcGGUggCGGCgagcgccccgcGGGGCCCg -3' miRNA: 3'- -GCGGCGGCc---CCAa-GUCGa----------CCCCGGGg -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 104876 | 0.7 | 0.263285 |
Target: 5'- gCGCCGCCGcagcGGUggCGGCgagcgccccgcGGGGCCCg -3' miRNA: 3'- -GCGGCGGCc---CCAa-GUCGa----------CCCCGGGg -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 133165 | 0.7 | 0.281479 |
Target: 5'- cCGCUGcCCGGGGaggcGCUGGcGGCgCCg -3' miRNA: 3'- -GCGGC-GGCCCCaaguCGACC-CCGgGG- -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 133805 | 0.7 | 0.269241 |
Target: 5'- gGCCGCgCaGGGcgCGgcGCUGGGGCUCg -3' miRNA: 3'- gCGGCG-GcCCCaaGU--CGACCCCGGGg -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 101378 | 0.7 | 0.265655 |
Target: 5'- gCGCCGCgGGGGcugcccgCGGCgccgccggcaaucgGGGGUCUCg -3' miRNA: 3'- -GCGGCGgCCCCaa-----GUCGa-------------CCCCGGGG- -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 17784 | 0.7 | 0.257436 |
Target: 5'- gGCCGCUa-GGUUCAGgacGGGCCCCa -3' miRNA: 3'- gCGGCGGccCCAAGUCgacCCCGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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