Results 81 - 100 of 257 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
6461 | 5' | -65.6 | NC_001847.1 | + | 10563 | 0.7 | 0.263285 |
Target: 5'- cCGgCGCCGGGcc-CGGCgccGGcGGCCCCc -3' miRNA: 3'- -GCgGCGGCCCcaaGUCGa--CC-CCGGGG- -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 133805 | 0.7 | 0.269241 |
Target: 5'- gGCCGCgCaGGGcgCGgcGCUGGGGCUCg -3' miRNA: 3'- gCGGCG-GcCCCaaGU--CGACCCCGGGg -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 63119 | 0.7 | 0.263285 |
Target: 5'- cCGCCGCCGcgcacGGG-UCGGUUGugcaccaggucGGGCCCg -3' miRNA: 3'- -GCGGCGGC-----CCCaAGUCGAC-----------CCCGGGg -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 75871 | 0.7 | 0.257436 |
Target: 5'- cCGCCGCCGGGGcUCgagAGCcaaaucauGGCCCUg -3' miRNA: 3'- -GCGGCGGCCCCaAG---UCGacc-----CCGGGG- -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 78324 | 0.69 | 0.287762 |
Target: 5'- gCGCgCGCCGcGGGccCGGCUuGGGCgCCg -3' miRNA: 3'- -GCG-GCGGC-CCCaaGUCGAcCCCGgGG- -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 53576 | 0.69 | 0.294154 |
Target: 5'- aGCCGCCGGccccGcgCAGCUgcgcGGGGCCg- -3' miRNA: 3'- gCGGCGGCCc---CaaGUCGA----CCCCGGgg -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 61444 | 0.69 | 0.320827 |
Target: 5'- gCGCCGCCGGGcg-CGGCgaGGcGGUCgCg -3' miRNA: 3'- -GCGGCGGCCCcaaGUCGa-CC-CCGGgG- -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 89593 | 0.69 | 0.320827 |
Target: 5'- aCGCCGCCGcGGUgaaCGcGCUGcgcggcacGGCCCCg -3' miRNA: 3'- -GCGGCGGCcCCAa--GU-CGACc-------CCGGGG- -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 51580 | 0.69 | 0.287762 |
Target: 5'- gCGgCGCCGGGGcagccgUCGGgaGGGcaguGCUCCa -3' miRNA: 3'- -GCgGCGGCCCCa-----AGUCgaCCC----CGGGG- -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 69878 | 0.69 | 0.320827 |
Target: 5'- cCGCCGCUGcGGacCGGCcGcGGGCCCg -3' miRNA: 3'- -GCGGCGGCcCCaaGUCGaC-CCCGGGg -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 33097 | 0.69 | 0.327772 |
Target: 5'- cCGaacaCGCCGGaGcaUgGGCcgGGGGCCCCg -3' miRNA: 3'- -GCg---GCGGCC-CcaAgUCGa-CCCCGGGG- -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 134909 | 0.69 | 0.327772 |
Target: 5'- gGgCGUCGGGGcgCgaggcccgGGCUcGGGCCCCc -3' miRNA: 3'- gCgGCGGCCCCaaG--------UCGAcCCCGGGG- -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 32127 | 0.69 | 0.320827 |
Target: 5'- cCGCCGCCGGc-----GCUGGGcGCCgCCg -3' miRNA: 3'- -GCGGCGGCCccaaguCGACCC-CGG-GG- -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 134235 | 0.69 | 0.313993 |
Target: 5'- gCGCCGgCGGGcGgcggccggCGGCcgcGGcGGCCCCg -3' miRNA: 3'- -GCGGCgGCCC-Caa------GUCGa--CC-CCGGGG- -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 27144 | 0.69 | 0.313993 |
Target: 5'- uGCCGuCCGGGGggcgCAGCcgcGGcGGCcagCCCa -3' miRNA: 3'- gCGGC-GGCCCCaa--GUCGa--CC-CCG---GGG- -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 132818 | 0.69 | 0.328473 |
Target: 5'- aGCCGCCGcugcccgcccgCGuGCUGGGGCCCa -3' miRNA: 3'- gCGGCGGCcccaa------GU-CGACCCCGGGg -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 3979 | 0.69 | 0.327772 |
Target: 5'- gGgCGCCGGGGgccgggcgcgCGGCcccgcGGGGCgCCg -3' miRNA: 3'- gCgGCGGCCCCaa--------GUCGa----CCCCGgGG- -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 68444 | 0.69 | 0.287762 |
Target: 5'- aGCgGCCGcagaGGUccgcgcccgCGGCcGGGGCCCCg -3' miRNA: 3'- gCGgCGGCc---CCAa--------GUCGaCCCCGGGG- -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 31422 | 0.69 | 0.313993 |
Target: 5'- gCGCCGgCGGGcGgcggccggCGGCcgcGGcGGCCCCg -3' miRNA: 3'- -GCGGCgGCCC-Caa------GUCGa--CC-CCGGGG- -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 30005 | 0.69 | 0.328473 |
Target: 5'- aGCCGCCGcugcccgcccgCGuGCUGGGGCCCa -3' miRNA: 3'- gCGGCGGCcccaa------GU-CGACCCCGGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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