miRNA display CGI


Results 41 - 60 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6461 5' -65.6 NC_001847.1 + 32902 0.72 0.186325
Target:  5'- gGCCGgCGGGGa--AGCcGGGGCCgCg -3'
miRNA:   3'- gCGGCgGCCCCaagUCGaCCCCGGgG- -5'
6461 5' -65.6 NC_001847.1 + 31567 0.72 0.19077
Target:  5'- gCGCCGCCGGcGGcgggcCGGCcucgcccuaggGGGGCCCg -3'
miRNA:   3'- -GCGGCGGCC-CCaa---GUCGa----------CCCCGGGg -5'
6461 5' -65.6 NC_001847.1 + 70764 0.72 0.19077
Target:  5'- gGCCGuuGGGGacCGGCuaguguuuuUGGaGGCCCUa -3'
miRNA:   3'- gCGGCggCCCCaaGUCG---------ACC-CCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 134380 0.72 0.19077
Target:  5'- gCGCCGCCGGcGGcgggcCGGCcucgcccuaggGGGGCCCg -3'
miRNA:   3'- -GCGGCGGCC-CCaa---GUCGa----------CCCCGGGg -5'
6461 5' -65.6 NC_001847.1 + 85101 0.72 0.195308
Target:  5'- gGCCGCCGGccaGGUUgaucaucaCGGCgcgcccGGGGCCCa -3'
miRNA:   3'- gCGGCGGCC---CCAA--------GUCGa-----CCCCGGGg -5'
6461 5' -65.6 NC_001847.1 + 38496 0.72 0.195308
Target:  5'- aCGUCGCCGGGGggCGGCgc-GGUCgCCg -3'
miRNA:   3'- -GCGGCGGCCCCaaGUCGaccCCGG-GG- -5'
6461 5' -65.6 NC_001847.1 + 22104 0.72 0.19994
Target:  5'- gGCgCGCCGGGGgcgaCAGC-GGGcGCgCCCu -3'
miRNA:   3'- gCG-GCGGCCCCaa--GUCGaCCC-CG-GGG- -5'
6461 5' -65.6 NC_001847.1 + 124917 0.72 0.19994
Target:  5'- gGCgCGCCGGGGgcgaCAGC-GGGcGCgCCCu -3'
miRNA:   3'- gCG-GCGGCCCCaa--GUCGaCCC-CG-GGG- -5'
6461 5' -65.6 NC_001847.1 + 34457 0.72 0.204667
Target:  5'- gGCCGCCuGGGUgcgagaaAGCcuccUGGGGaCCCCc -3'
miRNA:   3'- gCGGCGGcCCCAag-----UCG----ACCCC-GGGG- -5'
6461 5' -65.6 NC_001847.1 + 74144 0.71 0.212926
Target:  5'- uGgCGCCGGGGcgaaUgauggcggcgccucUCGGCgUGGGGCCCa -3'
miRNA:   3'- gCgGCGGCCCC----A--------------AGUCG-ACCCCGGGg -5'
6461 5' -65.6 NC_001847.1 + 45518 0.71 0.214413
Target:  5'- cCGCCGCCGGGcGgcgCGGaC-GGGGCCgugCCg -3'
miRNA:   3'- -GCGGCGGCCC-Caa-GUC-GaCCCCGG---GG- -5'
6461 5' -65.6 NC_001847.1 + 118419 0.71 0.219433
Target:  5'- cCGUCGCCuGcGGUcUCGGCgccgUGGGGCUCCu -3'
miRNA:   3'- -GCGGCGGcC-CCA-AGUCG----ACCCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 54502 0.71 0.219433
Target:  5'- gCGCCgggGCCGGGGUggggggCGGUggggcGGGGCCguCCg -3'
miRNA:   3'- -GCGG---CGGCCCCAa-----GUCGa----CCCCGG--GG- -5'
6461 5' -65.6 NC_001847.1 + 68912 0.71 0.219433
Target:  5'- gCGCCGCCGcgcugaGGUUCGGCgcGGcGGCCgCg -3'
miRNA:   3'- -GCGGCGGCc-----CCAAGUCGa-CC-CCGGgG- -5'
6461 5' -65.6 NC_001847.1 + 129011 0.71 0.224554
Target:  5'- -aCCGCCGGGGUccUgGGCgggaagcgGGGaGUCCCa -3'
miRNA:   3'- gcGGCGGCCCCA--AgUCGa-------CCC-CGGGG- -5'
6461 5' -65.6 NC_001847.1 + 44350 0.71 0.224554
Target:  5'- aCGCgCGcCCGGGGcu--GCUGaacGGGCCCCu -3'
miRNA:   3'- -GCG-GC-GGCCCCaaguCGAC---CCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 26198 0.71 0.224554
Target:  5'- -aCCGCCGGGGUccUgGGCgggaagcgGGGaGUCCCa -3'
miRNA:   3'- gcGGCGGCCCCA--AgUCGa-------CCC-CGGGG- -5'
6461 5' -65.6 NC_001847.1 + 13546 0.71 0.228198
Target:  5'- cCGCCGCCGGGG--CGGCgcggUGGGuugcauugccaaauGCCCUu -3'
miRNA:   3'- -GCGGCGGCCCCaaGUCG----ACCC--------------CGGGG- -5'
6461 5' -65.6 NC_001847.1 + 101078 0.71 0.229776
Target:  5'- cCGCCGCgGGGGccgggUCGGC-GGGGCg-- -3'
miRNA:   3'- -GCGGCGgCCCCa----AGUCGaCCCCGggg -5'
6461 5' -65.6 NC_001847.1 + 101022 0.71 0.229776
Target:  5'- uGCCGCCGccg--CGGCcGGGGUCCCa -3'
miRNA:   3'- gCGGCGGCcccaaGUCGaCCCCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.