miRNA display CGI


Results 61 - 80 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6461 5' -65.6 NC_001847.1 + 23281 0.71 0.231893
Target:  5'- gCGCUGCaCGGGGgggCggagcacaggagcucGGgUGGGGUCCCg -3'
miRNA:   3'- -GCGGCG-GCCCCaa-G---------------UCgACCCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 126094 0.71 0.231893
Target:  5'- gCGCUGCaCGGGGgggCggagcacaggagcucGGgUGGGGUCCCg -3'
miRNA:   3'- -GCGGCG-GCCCCaa-G---------------UCgACCCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 100148 0.71 0.232958
Target:  5'- cCGCgGCCGGGaagagggccgaCAGCgcgGGGGCCgCCa -3'
miRNA:   3'- -GCGgCGGCCCcaa--------GUCGa--CCCCGG-GG- -5'
6461 5' -65.6 NC_001847.1 + 119102 0.71 0.2351
Target:  5'- gGCCGCCGcGGggCGGCggggcaggcaUGGGGCCg- -3'
miRNA:   3'- gCGGCGGCcCCaaGUCG----------ACCCCGGgg -5'
6461 5' -65.6 NC_001847.1 + 127350 0.71 0.2351
Target:  5'- uGCCGCggcaGGGG--CGGC-GGGGCCCg -3'
miRNA:   3'- gCGGCGg---CCCCaaGUCGaCCCCGGGg -5'
6461 5' -65.6 NC_001847.1 + 100950 0.71 0.2351
Target:  5'- aGCCGCCGcGGUaaCAGC-GGGGCUCg -3'
miRNA:   3'- gCGGCGGCcCCAa-GUCGaCCCCGGGg -5'
6461 5' -65.6 NC_001847.1 + 27213 0.71 0.246058
Target:  5'- gGCgCGCCGGGGcgcUCgAGCUGcGGGUCgCa -3'
miRNA:   3'- gCG-GCGGCCCCa--AG-UCGAC-CCCGGgG- -5'
6461 5' -65.6 NC_001847.1 + 89528 0.7 0.256857
Target:  5'- uGCCGCCGGGcggCAGCgacgGGucagauuGGCCCg -3'
miRNA:   3'- gCGGCGGCCCcaaGUCGa---CC-------CCGGGg -5'
6461 5' -65.6 NC_001847.1 + 126243 0.7 0.257436
Target:  5'- gGgCGuCCGGGGUcgUCGGC-GGGGCgUCCg -3'
miRNA:   3'- gCgGC-GGCCCCA--AGUCGaCCCCG-GGG- -5'
6461 5' -65.6 NC_001847.1 + 75871 0.7 0.257436
Target:  5'- cCGCCGCCGGGGcUCgagAGCcaaaucauGGCCCUg -3'
miRNA:   3'- -GCGGCGGCCCCaAG---UCGacc-----CCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 17784 0.7 0.257436
Target:  5'- gGCCGCUa-GGUUCAGgacGGGCCCCa -3'
miRNA:   3'- gCGGCGGccCCAAGUCgacCCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 23430 0.7 0.257436
Target:  5'- gGgCGuCCGGGGUcgUCGGC-GGGGCgUCCg -3'
miRNA:   3'- gCgGC-GGCCCCA--AGUCGaCCCCG-GGG- -5'
6461 5' -65.6 NC_001847.1 + 2063 0.7 0.263285
Target:  5'- gCGCCGCCGcagcGGUggCGGCgagcgccccgcGGGGCCCg -3'
miRNA:   3'- -GCGGCGGCc---CCAa-GUCGa----------CCCCGGGg -5'
6461 5' -65.6 NC_001847.1 + 63119 0.7 0.263285
Target:  5'- cCGCCGCCGcgcacGGG-UCGGUUGugcaccaggucGGGCCCg -3'
miRNA:   3'- -GCGGCGGC-----CCCaAGUCGAC-----------CCCGGGg -5'
6461 5' -65.6 NC_001847.1 + 115687 0.7 0.263285
Target:  5'- gGCUGCgCGGGGgcgagagcCGGCUGcGGCCCg -3'
miRNA:   3'- gCGGCG-GCCCCaa------GUCGACcCCGGGg -5'
6461 5' -65.6 NC_001847.1 + 10563 0.7 0.263285
Target:  5'- cCGgCGCCGGGcc-CGGCgccGGcGGCCCCc -3'
miRNA:   3'- -GCgGCGGCCCcaaGUCGa--CC-CCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 113376 0.7 0.263285
Target:  5'- cCGgCGCCGGGcc-CGGCgccGGcGGCCCCc -3'
miRNA:   3'- -GCgGCGGCCCcaaGUCGa--CC-CCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 104876 0.7 0.263285
Target:  5'- gCGCCGCCGcagcGGUggCGGCgagcgccccgcGGGGCCCg -3'
miRNA:   3'- -GCGGCGGCc---CCAa-GUCGa----------CCCCGGGg -5'
6461 5' -65.6 NC_001847.1 + 101378 0.7 0.265655
Target:  5'- gCGCCGCgGGGGcugcccgCGGCgccgccggcaaucgGGGGUCUCg -3'
miRNA:   3'- -GCGGCGgCCCCaa-----GUCGa-------------CCCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 30992 0.7 0.269241
Target:  5'- gGCCGCgCaGGGcgCGgcGCUGGGGCUCg -3'
miRNA:   3'- gCGGCG-GcCCCaaGU--CGACCCCGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.