miRNA display CGI


Results 81 - 100 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6461 5' -65.6 NC_001847.1 + 30992 0.7 0.269241
Target:  5'- gGCCGCgCaGGGcgCGgcGCUGGGGCUCg -3'
miRNA:   3'- gCGGCG-GcCCCaaGU--CGACCCCGGGg -5'
6461 5' -65.6 NC_001847.1 + 128360 0.7 0.281479
Target:  5'- gCGCUGCUGGuGGccacggagCAGCUGGcGCCUCg -3'
miRNA:   3'- -GCGGCGGCC-CCaa------GUCGACCcCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 133165 0.7 0.281479
Target:  5'- cCGCUGcCCGGGGaggcGCUGGcGGCgCCg -3'
miRNA:   3'- -GCGGC-GGCCCCaaguCGACC-CCGgGG- -5'
6461 5' -65.6 NC_001847.1 + 30352 0.7 0.281479
Target:  5'- cCGCUGcCCGGGGaggcGCUGGcGGCgCCg -3'
miRNA:   3'- -GCGGC-GGCCCCaaguCGACC-CCGgGG- -5'
6461 5' -65.6 NC_001847.1 + 36010 0.69 0.287762
Target:  5'- gGCCG-CGGGcGUgguGCUGGGGCUgCg -3'
miRNA:   3'- gCGGCgGCCC-CAaguCGACCCCGGgG- -5'
6461 5' -65.6 NC_001847.1 + 68444 0.69 0.287762
Target:  5'- aGCgGCCGcagaGGUccgcgcccgCGGCcGGGGCCCCg -3'
miRNA:   3'- gCGgCGGCc---CCAa--------GUCGaCCCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 51580 0.69 0.287762
Target:  5'- gCGgCGCCGGGGcagccgUCGGgaGGGcaguGCUCCa -3'
miRNA:   3'- -GCgGCGGCCCCa-----AGUCgaCCC----CGGGG- -5'
6461 5' -65.6 NC_001847.1 + 74258 0.69 0.287762
Target:  5'- uGCCGCCGcu-----GCUGGGGCCCg -3'
miRNA:   3'- gCGGCGGCcccaaguCGACCCCGGGg -5'
6461 5' -65.6 NC_001847.1 + 78324 0.69 0.287762
Target:  5'- gCGCgCGCCGcGGGccCGGCUuGGGCgCCg -3'
miRNA:   3'- -GCG-GCGGC-CCCaaGUCGAcCCCGgGG- -5'
6461 5' -65.6 NC_001847.1 + 31061 0.69 0.287762
Target:  5'- uCGCCGCUGuGGGUUuucgcaacCAguacgacgcggcGCUGGGGCCg- -3'
miRNA:   3'- -GCGGCGGC-CCCAA--------GU------------CGACCCCGGgg -5'
6461 5' -65.6 NC_001847.1 + 75462 0.69 0.294154
Target:  5'- uGCCGaCCGGGG---GGgaGGGGCCa- -3'
miRNA:   3'- gCGGC-GGCCCCaagUCgaCCCCGGgg -5'
6461 5' -65.6 NC_001847.1 + 53576 0.69 0.294154
Target:  5'- aGCCGCCGGccccGcgCAGCUgcgcGGGGCCg- -3'
miRNA:   3'- gCGGCGGCCc---CaaGUCGA----CCCCGGgg -5'
6461 5' -65.6 NC_001847.1 + 132491 0.69 0.296093
Target:  5'- aGCCGCCGGGcgaaggcgccgcaagCGGCgacGGcGGUCCCg -3'
miRNA:   3'- gCGGCGGCCCcaa------------GUCGa--CC-CCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 87326 0.69 0.300656
Target:  5'- gGCCGCCGGcaucccguccccGGUgUCGGCcGaGGGCCUg -3'
miRNA:   3'- gCGGCGGCC------------CCA-AGUCGaC-CCCGGGg -5'
6461 5' -65.6 NC_001847.1 + 98695 0.69 0.307269
Target:  5'- gGCCgaaGCCGGGGccgaAGCcGGGGCCg- -3'
miRNA:   3'- gCGG---CGGCCCCaag-UCGaCCCCGGgg -5'
6461 5' -65.6 NC_001847.1 + 98659 0.69 0.307269
Target:  5'- gGCCgaaGCCGGGGccgaAGCcGGGGCCg- -3'
miRNA:   3'- gCGG---CGGCCCCaag-UCGaCCCCGGgg -5'
6461 5' -65.6 NC_001847.1 + 27514 0.69 0.307269
Target:  5'- cCGCCGCCGcGGcggCGGC-GGGGaCgCCCg -3'
miRNA:   3'- -GCGGCGGCcCCaa-GUCGaCCCC-G-GGG- -5'
6461 5' -65.6 NC_001847.1 + 31422 0.69 0.313993
Target:  5'- gCGCCGgCGGGcGgcggccggCGGCcgcGGcGGCCCCg -3'
miRNA:   3'- -GCGGCgGCCC-Caa------GUCGa--CC-CCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 134235 0.69 0.313993
Target:  5'- gCGCCGgCGGGcGgcggccggCGGCcgcGGcGGCCCCg -3'
miRNA:   3'- -GCGGCgGCCC-Caa------GUCGa--CC-CCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 27144 0.69 0.313993
Target:  5'- uGCCGuCCGGGGggcgCAGCcgcGGcGGCcagCCCa -3'
miRNA:   3'- gCGGC-GGCCCCaa--GUCGa--CC-CCG---GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.