miRNA display CGI


Results 41 - 60 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6461 5' -65.6 NC_001847.1 + 90326 0.66 0.462178
Target:  5'- gGCCGCCGGGGccg----GGGGCgCa -3'
miRNA:   3'- gCGGCGGCCCCaagucgaCCCCGgGg -5'
6461 5' -65.6 NC_001847.1 + 24326 0.66 0.462178
Target:  5'- uGcCCGCgCGGGGgcgaugUCcaAGUggagggGGGGCCCg -3'
miRNA:   3'- gC-GGCG-GCCCCa-----AG--UCGa-----CCCCGGGg -5'
6461 5' -65.6 NC_001847.1 + 92676 0.66 0.453475
Target:  5'- gCGCCGCCccaccagcaccuucaGGGGgacgguguuaagCAGCUGGcagaGCCUCg -3'
miRNA:   3'- -GCGGCGG---------------CCCCaa----------GUCGACCc---CGGGG- -5'
6461 5' -65.6 NC_001847.1 + 60859 0.66 0.453475
Target:  5'- gCGcCCGCCGaGGccagcgCAGCgcgcgcGcGGGCCCCa -3'
miRNA:   3'- -GC-GGCGGC-CCcaa---GUCGa-----C-CCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 123437 0.66 0.453475
Target:  5'- uGCCGCCGaauGGGUUUgccgGGCUu-GGCCCg -3'
miRNA:   3'- gCGGCGGC---CCCAAG----UCGAccCCGGGg -5'
6461 5' -65.6 NC_001847.1 + 73213 0.66 0.450882
Target:  5'- gCGCCGCCgcugacgcggaggaGGGGggCGGCggcgcGGGcGCgCUCg -3'
miRNA:   3'- -GCGGCGG--------------CCCCaaGUCGa----CCC-CG-GGG- -5'
6461 5' -65.6 NC_001847.1 + 46214 0.66 0.448297
Target:  5'- cCGCCGCCGGGc--CGGCcgcgGGGaaaucucgcaccaguGCCUCg -3'
miRNA:   3'- -GCGGCGGCCCcaaGUCGa---CCC---------------CGGGG- -5'
6461 5' -65.6 NC_001847.1 + 107637 0.66 0.444863
Target:  5'- cCGCCGCCGcGGcggCGGCcGaGGCCUCu -3'
miRNA:   3'- -GCGGCGGCcCCaa-GUCGaCcCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 53711 0.66 0.444863
Target:  5'- gCGCCGCCGGcGGcUC-GC-GGGGCg-- -3'
miRNA:   3'- -GCGGCGGCC-CCaAGuCGaCCCCGggg -5'
6461 5' -65.6 NC_001847.1 + 82548 0.66 0.444863
Target:  5'- gCGCCGcCCGcGGGcUCGGCcucGGCCgCCg -3'
miRNA:   3'- -GCGGC-GGC-CCCaAGUCGaccCCGG-GG- -5'
6461 5' -65.6 NC_001847.1 + 47896 0.66 0.444863
Target:  5'- cCGCgCGCCGGGGcgCAGCcGGuaCCagCCg -3'
miRNA:   3'- -GCG-GCGGCCCCaaGUCGaCCccGG--GG- -5'
6461 5' -65.6 NC_001847.1 + 78284 0.66 0.444007
Target:  5'- uGCuCGCCucugcgaGGcGGUgcucgggCGGCUGGGccGCCCCc -3'
miRNA:   3'- gCG-GCGG-------CC-CCAa------GUCGACCC--CGGGG- -5'
6461 5' -65.6 NC_001847.1 + 100647 0.66 0.443151
Target:  5'- gCGgCGCCaGGGccgcgcugcugCGGCggGGGGUCCCc -3'
miRNA:   3'- -GCgGCGGcCCCaa---------GUCGa-CCCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 83240 0.66 0.442297
Target:  5'- cCGCgGCCGGGGcggcggccgaaagcgCGGCgGGGGCg-- -3'
miRNA:   3'- -GCGgCGGCCCCaa-------------GUCGaCCCCGggg -5'
6461 5' -65.6 NC_001847.1 + 23184 0.66 0.43974
Target:  5'- gGCUggGCUGGGGUg-GGCUGGgcuaaccuugcggcaGGUCCCu -3'
miRNA:   3'- gCGG--CGGCCCCAagUCGACC---------------CCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 125997 0.66 0.43974
Target:  5'- gGCUggGCUGGGGUg-GGCUGGgcuaaccuugcggcaGGUCCCu -3'
miRNA:   3'- gCGG--CGGCCCCAagUCGACC---------------CCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 47694 0.66 0.43719
Target:  5'- gCGCCGCgGGGccGUUgAGCgcgcgcagcagcucUucgagcgcggcgggcGGGGCCCCg -3'
miRNA:   3'- -GCGGCGgCCC--CAAgUCG--------------A---------------CCCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 37584 0.66 0.436343
Target:  5'- gGCCGCUGcGGcugCGGCggccgGGGGCcggCCCg -3'
miRNA:   3'- gCGGCGGCcCCaa-GUCGa----CCCCG---GGG- -5'
6461 5' -65.6 NC_001847.1 + 123522 0.66 0.436343
Target:  5'- gGCUGCCGcGGGcUCGGCUaaGGCCa- -3'
miRNA:   3'- gCGGCGGC-CCCaAGUCGAccCCGGgg -5'
6461 5' -65.6 NC_001847.1 + 54465 0.66 0.436343
Target:  5'- cCGCCGCCGGcGcgCAGCcGuucGGCUCCc -3'
miRNA:   3'- -GCGGCGGCCcCaaGUCGaCc--CCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.