miRNA display CGI


Results 61 - 80 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6461 5' -65.6 NC_001847.1 + 125229 0.66 0.435496
Target:  5'- cCGCCuGCCGGGcGUacUCGGC-GGccacgagcgcgacGGCCUCg -3'
miRNA:   3'- -GCGG-CGGCCC-CA--AGUCGaCC-------------CCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 44933 0.66 0.435496
Target:  5'- uGUCGCUGGGGcgCucgGGCUGGGcgacggcGCgCCg -3'
miRNA:   3'- gCGGCGGCCCCaaG---UCGACCC-------CGgGG- -5'
6461 5' -65.6 NC_001847.1 + 20073 0.66 0.435496
Target:  5'- uCGCUGCCugcgcucGGGGcgagcgcCAGCUGGagcucuGCCCCg -3'
miRNA:   3'- -GCGGCGG-------CCCCaa-----GUCGACCc-----CGGGG- -5'
6461 5' -65.6 NC_001847.1 + 59523 0.66 0.432961
Target:  5'- uCGCCGUCGuGGGgcggcaucgcggCAGCUGgcuggugcuGGGCCUg -3'
miRNA:   3'- -GCGGCGGC-CCCaa----------GUCGAC---------CCCGGGg -5'
6461 5' -65.6 NC_001847.1 + 132715 0.67 0.427917
Target:  5'- gGCCcuGCCGGccg-CcGCgGGGGCCCCu -3'
miRNA:   3'- gCGG--CGGCCccaaGuCGaCCCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 3149 0.67 0.427917
Target:  5'- gCGgCGCCGGcGGcgCGGC--GGGCCgCCu -3'
miRNA:   3'- -GCgGCGGCC-CCaaGUCGacCCCGG-GG- -5'
6461 5' -65.6 NC_001847.1 + 78078 0.67 0.427917
Target:  5'- cCGCCGCgcUGGGGUUgAGCUuagccgccucGGCCCa -3'
miRNA:   3'- -GCGGCG--GCCCCAAgUCGAcc--------CCGGGg -5'
6461 5' -65.6 NC_001847.1 + 11169 0.67 0.427917
Target:  5'- cCGgCGUCGGG----AGCUGGGGCUgCCg -3'
miRNA:   3'- -GCgGCGGCCCcaagUCGACCCCGG-GG- -5'
6461 5' -65.6 NC_001847.1 + 99798 0.67 0.427917
Target:  5'- gCGCCuGUggugCGGGGUcggagCGGCcgGGGGCCgCu -3'
miRNA:   3'- -GCGG-CG----GCCCCAa----GUCGa-CCCCGGgG- -5'
6461 5' -65.6 NC_001847.1 + 105962 0.67 0.427917
Target:  5'- gCGgCGCCGGcGGcgCGGC--GGGCCgCCu -3'
miRNA:   3'- -GCgGCGGCC-CCaaGUCGacCCCGG-GG- -5'
6461 5' -65.6 NC_001847.1 + 86979 0.67 0.419589
Target:  5'- aCGCCGCCGGccGGgcCGGCgcgcgccGGCCCg -3'
miRNA:   3'- -GCGGCGGCC--CCaaGUCGacc----CCGGGg -5'
6461 5' -65.6 NC_001847.1 + 90854 0.67 0.419589
Target:  5'- gCGCCccgggGCCGGGGcuggugUCgaGGCcGGGGCCg- -3'
miRNA:   3'- -GCGG-----CGGCCCCa-----AG--UCGaCCCCGGgg -5'
6461 5' -65.6 NC_001847.1 + 81743 0.67 0.419589
Target:  5'- gGCCGUgcGGGUUCAGcCUGcGGCgCCg -3'
miRNA:   3'- gCGGCGgcCCCAAGUC-GACcCCGgGG- -5'
6461 5' -65.6 NC_001847.1 + 120015 0.67 0.419589
Target:  5'- gCGCUGCCcGGGUgagCGGCcuaGGCCCUc -3'
miRNA:   3'- -GCGGCGGcCCCAa--GUCGaccCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 88418 0.67 0.419589
Target:  5'- gGCUGUgugugCGGGGUcucgcuuuauUCGGCgugggccGcGGGCCCCg -3'
miRNA:   3'- gCGGCG-----GCCCCA----------AGUCGa------C-CCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 116359 0.67 0.419589
Target:  5'- cCGCCGCCGcGGaGcUCGcGCUGucGGCCgCCg -3'
miRNA:   3'- -GCGGCGGC-CC-CaAGU-CGACc-CCGG-GG- -5'
6461 5' -65.6 NC_001847.1 + 67961 0.67 0.419589
Target:  5'- aGCCGCggcaGGGGgUCgccgccgagAGCggGGGGCCUg -3'
miRNA:   3'- gCGGCGg---CCCCaAG---------UCGa-CCCCGGGg -5'
6461 5' -65.6 NC_001847.1 + 62349 0.67 0.416285
Target:  5'- aGCCcgaaGCCGGGGUgcagccccgugcgCAGCUGGuGCgUCa -3'
miRNA:   3'- gCGG----CGGCCCCAa------------GUCGACCcCGgGG- -5'
6461 5' -65.6 NC_001847.1 + 57660 0.67 0.414639
Target:  5'- gCGCCGUCGGgcaggcggugggcacGGUgguGCUGGGcGCCgCg -3'
miRNA:   3'- -GCGGCGGCC---------------CCAaguCGACCC-CGGgG- -5'
6461 5' -65.6 NC_001847.1 + 99319 0.67 0.414639
Target:  5'- cCGcCCGCCGGGGgccgaAGCUaaagggugggcggccGGgcggaucuuGGCCCCu -3'
miRNA:   3'- -GC-GGCGGCCCCaag--UCGA---------------CC---------CCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.