miRNA display CGI


Results 41 - 60 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6461 5' -65.6 NC_001847.1 + 21960 0.68 0.371754
Target:  5'- gGCa-CCGGGGggggcuUUCGGC-GGcGGCCCCc -3'
miRNA:   3'- gCGgcGGCCCC------AAGUCGaCC-CCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 22104 0.72 0.19994
Target:  5'- gGCgCGCCGGGGgcgaCAGC-GGGcGCgCCCu -3'
miRNA:   3'- gCG-GCGGCCCCaa--GUCGaCCC-CG-GGG- -5'
6461 5' -65.6 NC_001847.1 + 22884 0.76 0.099027
Target:  5'- uCGCCGCCGGGGUUCugcaagagcauGGCUGggcuGGGCUg- -3'
miRNA:   3'- -GCGGCGGCCCCAAG-----------UCGAC----CCCGGgg -5'
6461 5' -65.6 NC_001847.1 + 23004 0.67 0.40323
Target:  5'- gGCUggGCUGGGGUg-GGCUGGGGUg-- -3'
miRNA:   3'- gCGG--CGGCCCCAagUCGACCCCGggg -5'
6461 5' -65.6 NC_001847.1 + 23064 0.66 0.479841
Target:  5'- gGCUggGCUGGGGUgggcUgGGCUGGGGUg-- -3'
miRNA:   3'- gCGG--CGGCCCCA----AgUCGACCCCGggg -5'
6461 5' -65.6 NC_001847.1 + 23094 0.66 0.479841
Target:  5'- gGCUggGCUGGGGUgggcUgGGCUGGGGUg-- -3'
miRNA:   3'- gCGG--CGGCCCCA----AgUCGACCCCGggg -5'
6461 5' -65.6 NC_001847.1 + 23184 0.66 0.43974
Target:  5'- gGCUggGCUGGGGUg-GGCUGGgcuaaccuugcggcaGGUCCCu -3'
miRNA:   3'- gCGG--CGGCCCCAagUCGACC---------------CCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 23281 0.71 0.231893
Target:  5'- gCGCUGCaCGGGGgggCggagcacaggagcucGGgUGGGGUCCCg -3'
miRNA:   3'- -GCGGCG-GCCCCaa-G---------------UCgACCCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 23430 0.7 0.257436
Target:  5'- gGgCGuCCGGGGUcgUCGGC-GGGGCgUCCg -3'
miRNA:   3'- gCgGC-GGCCCCA--AGUCGaCCCCG-GGG- -5'
6461 5' -65.6 NC_001847.1 + 24326 0.66 0.462178
Target:  5'- uGcCCGCgCGGGGgcgaugUCcaAGUggagggGGGGCCCg -3'
miRNA:   3'- gC-GGCG-GCCCCa-----AG--UCGa-----CCCCGGGg -5'
6461 5' -65.6 NC_001847.1 + 26198 0.71 0.224554
Target:  5'- -aCCGCCGGGGUccUgGGCgggaagcgGGGaGUCCCa -3'
miRNA:   3'- gcGGCGGCCCCA--AgUCGa-------CCC-CGGGG- -5'
6461 5' -65.6 NC_001847.1 + 27144 0.69 0.313993
Target:  5'- uGCCGuCCGGGGggcgCAGCcgcGGcGGCcagCCCa -3'
miRNA:   3'- gCGGC-GGCCCCaa--GUCGa--CC-CCG---GGG- -5'
6461 5' -65.6 NC_001847.1 + 27213 0.71 0.246058
Target:  5'- gGCgCGCCGGGGcgcUCgAGCUGcGGGUCgCa -3'
miRNA:   3'- gCG-GCGGCCCCa--AG-UCGAC-CCCGGgG- -5'
6461 5' -65.6 NC_001847.1 + 27419 0.76 0.111816
Target:  5'- uGCCGCCGGcgcggucGGUgucguucgCAGCggcgcgGGGGCCCUg -3'
miRNA:   3'- gCGGCGGCC-------CCAa-------GUCGa-----CCCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 27514 0.69 0.307269
Target:  5'- cCGCCGCCGcGGcggCGGC-GGGGaCgCCCg -3'
miRNA:   3'- -GCGGCGGCcCCaa-GUCGaCCCC-G-GGG- -5'
6461 5' -65.6 NC_001847.1 + 27741 0.68 0.364151
Target:  5'- aGCCGCggCGGcGGUUgCGGCggGGGGCUg- -3'
miRNA:   3'- gCGGCG--GCC-CCAA-GUCGa-CCCCGGgg -5'
6461 5' -65.6 NC_001847.1 + 29199 0.68 0.334828
Target:  5'- gCGCCGCCGGGcucccgGUgcucUCGGCcgcgGcGGGCCgCg -3'
miRNA:   3'- -GCGGCGGCCC------CA----AGUCGa---C-CCCGGgG- -5'
6461 5' -65.6 NC_001847.1 + 29510 0.74 0.15395
Target:  5'- cCGCCGgCGGaGGUgccggcgCGGCUGGcGGCCgCg -3'
miRNA:   3'- -GCGGCgGCC-CCAa------GUCGACC-CCGGgG- -5'
6461 5' -65.6 NC_001847.1 + 29562 0.67 0.411359
Target:  5'- cCGCCGgCGGGGgcgcCGGCgccGGcGCCgCCg -3'
miRNA:   3'- -GCGGCgGCCCCaa--GUCGac-CC-CGG-GG- -5'
6461 5' -65.6 NC_001847.1 + 29902 0.66 0.470968
Target:  5'- gGCCcuGCCGGccg-CcGCggGGGGCCCCu -3'
miRNA:   3'- gCGG--CGGCCccaaGuCGa-CCCCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.