miRNA display CGI


Results 61 - 80 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6461 5' -65.6 NC_001847.1 + 30005 0.69 0.328473
Target:  5'- aGCCGCCGcugcccgcccgCGuGCUGGGGCCCa -3'
miRNA:   3'- gCGGCGGCcccaa------GU-CGACCCCGGGg -5'
6461 5' -65.6 NC_001847.1 + 30056 0.67 0.395204
Target:  5'- aCGuuGCCGGcgcGGUggcgCGGCUGGGaGUgCUg -3'
miRNA:   3'- -GCggCGGCC---CCAa---GUCGACCC-CGgGG- -5'
6461 5' -65.6 NC_001847.1 + 30352 0.7 0.281479
Target:  5'- cCGCUGcCCGGGGaggcGCUGGcGGCgCCg -3'
miRNA:   3'- -GCGGC-GGCCCCaaguCGACC-CCGgGG- -5'
6461 5' -65.6 NC_001847.1 + 30813 0.66 0.479841
Target:  5'- uGCCGCCGcGGcaaacaCGGCggcGGGGCCg- -3'
miRNA:   3'- gCGGCGGC-CCcaa---GUCGa--CCCCGGgg -5'
6461 5' -65.6 NC_001847.1 + 30917 0.68 0.334828
Target:  5'- gCGCgCGCCGGcGGUgCGGC-GGaGGCCUUc -3'
miRNA:   3'- -GCG-GCGGCC-CCAaGUCGaCC-CCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 30992 0.7 0.269241
Target:  5'- gGCCGCgCaGGGcgCGgcGCUGGGGCUCg -3'
miRNA:   3'- gCGGCG-GcCCCaaGU--CGACCCCGGGg -5'
6461 5' -65.6 NC_001847.1 + 31061 0.69 0.287762
Target:  5'- uCGCCGCUGuGGGUUuucgcaacCAguacgacgcggcGCUGGGGCCg- -3'
miRNA:   3'- -GCGGCGGC-CCCAA--------GU------------CGACCCCGGgg -5'
6461 5' -65.6 NC_001847.1 + 31206 0.68 0.371754
Target:  5'- gCGCCGCCGcuGGU---GCUGGaGGCCgCg -3'
miRNA:   3'- -GCGGCGGCc-CCAaguCGACC-CCGGgG- -5'
6461 5' -65.6 NC_001847.1 + 31422 0.69 0.313993
Target:  5'- gCGCCGgCGGGcGgcggccggCGGCcgcGGcGGCCCCg -3'
miRNA:   3'- -GCGGCgGCCC-Caa------GUCGa--CC-CCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 31567 0.72 0.19077
Target:  5'- gCGCCGCCGGcGGcgggcCGGCcucgcccuaggGGGGCCCg -3'
miRNA:   3'- -GCGGCGGCC-CCaa---GUCGa----------CCCCGGGg -5'
6461 5' -65.6 NC_001847.1 + 31956 0.67 0.387282
Target:  5'- aGCCuGCCGcGG--CGGCgGcGGGCCCCg -3'
miRNA:   3'- gCGG-CGGCcCCaaGUCGaC-CCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 32096 0.69 0.327772
Target:  5'- gGgCGUCGGGGcgCgaggcccgGGCUcGGGCCCCc -3'
miRNA:   3'- gCgGCGGCCCCaaG--------UCGAcCCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 32127 0.69 0.320827
Target:  5'- cCGCCGCCGGc-----GCUGGGcGCCgCCg -3'
miRNA:   3'- -GCGGCGGCCccaaguCGACCC-CGG-GG- -5'
6461 5' -65.6 NC_001847.1 + 32131 0.77 0.089623
Target:  5'- gGgCGCCGGGGgcgggGGCgggggcgGGGGCCCCg -3'
miRNA:   3'- gCgGCGGCCCCaag--UCGa------CCCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 32319 0.67 0.400007
Target:  5'- gGUCGCaGGGGgcccgcgcggcgCGGCgcggagGGGGCCCa -3'
miRNA:   3'- gCGGCGgCCCCaa----------GUCGa-----CCCCGGGg -5'
6461 5' -65.6 NC_001847.1 + 32902 0.72 0.186325
Target:  5'- gGCCGgCGGGGa--AGCcGGGGCCgCg -3'
miRNA:   3'- gCGGCgGCCCCaagUCGaCCCCGGgG- -5'
6461 5' -65.6 NC_001847.1 + 33009 0.67 0.40323
Target:  5'- aGCgGCCGGGGggCGcGC-GGGGCg-- -3'
miRNA:   3'- gCGgCGGCCCCaaGU-CGaCCCCGggg -5'
6461 5' -65.6 NC_001847.1 + 33097 0.69 0.327772
Target:  5'- cCGaacaCGCCGGaGcaUgGGCcgGGGGCCCCg -3'
miRNA:   3'- -GCg---GCGGCC-CcaAgUCGa-CCCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 33914 0.67 0.377141
Target:  5'- gGCUGCuCGGGGa--GGCUGGccuccccgugugcaGGCCCg -3'
miRNA:   3'- gCGGCG-GCCCCaagUCGACC--------------CCGGGg -5'
6461 5' -65.6 NC_001847.1 + 34088 0.66 0.488796
Target:  5'- gGCC-CCGGGGccggccUCGGCgggugcgcaaauUGGGaCCCCg -3'
miRNA:   3'- gCGGcGGCCCCa-----AGUCG------------ACCCcGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.