miRNA display CGI


Results 81 - 100 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6461 5' -65.6 NC_001847.1 + 34457 0.72 0.204667
Target:  5'- gGCCGCCuGGGUgcgagaaAGCcuccUGGGGaCCCCc -3'
miRNA:   3'- gCGGCGGcCCCAag-----UCG----ACCCC-GGGG- -5'
6461 5' -65.6 NC_001847.1 + 35185 0.66 0.462178
Target:  5'- aCGCgGCCuucgaGGaGGagcgcgcgCGGCUGGGcGCCCUg -3'
miRNA:   3'- -GCGgCGG-----CC-CCaa------GUCGACCC-CGGGG- -5'
6461 5' -65.6 NC_001847.1 + 35622 0.76 0.104071
Target:  5'- cCGCCGCCGGcGGc---GCUGGGGCCa- -3'
miRNA:   3'- -GCGGCGGCC-CCaaguCGACCCCGGgg -5'
6461 5' -65.6 NC_001847.1 + 35957 0.68 0.334828
Target:  5'- gCGCUGCUGGcGGcgCuGCUGuGGCuCCCg -3'
miRNA:   3'- -GCGGCGGCC-CCaaGuCGACcCCG-GGG- -5'
6461 5' -65.6 NC_001847.1 + 36010 0.69 0.287762
Target:  5'- gGCCG-CGGGcGUgguGCUGGGGCUgCg -3'
miRNA:   3'- gCGGCgGCCC-CAaguCGACCCCGGgG- -5'
6461 5' -65.6 NC_001847.1 + 37053 0.68 0.370989
Target:  5'- aGCCuggGCUGGGGg-CGGCUGGugcacgcgguacuGGCCCg -3'
miRNA:   3'- gCGG---CGGCCCCaaGUCGACC-------------CCGGGg -5'
6461 5' -65.6 NC_001847.1 + 37584 0.66 0.436343
Target:  5'- gGCCGCUGcGGcugCGGCggccgGGGGCcggCCCg -3'
miRNA:   3'- gCGGCGGCcCCaa-GUCGa----CCCCG---GGG- -5'
6461 5' -65.6 NC_001847.1 + 38496 0.72 0.195308
Target:  5'- aCGUCGCCGGGGggCGGCgc-GGUCgCCg -3'
miRNA:   3'- -GCGGCGGCCCCaaGUCGaccCCGG-GG- -5'
6461 5' -65.6 NC_001847.1 + 38856 0.67 0.411359
Target:  5'- cCGCCGCCGGccccgaGUaCGGCcccGGuuccGGCCCCg -3'
miRNA:   3'- -GCGGCGGCCc-----CAaGUCGa--CC----CCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 39080 0.68 0.334828
Target:  5'- cCGCCGCCGGcuc-CAGaUGGGGCCa- -3'
miRNA:   3'- -GCGGCGGCCccaaGUCgACCCCGGgg -5'
6461 5' -65.6 NC_001847.1 + 39385 0.73 0.161531
Target:  5'- aCGCCGUCGGGGagcCGGCgccggccGGGCUCCu -3'
miRNA:   3'- -GCGGCGGCCCCaa-GUCGac-----CCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 40172 0.66 0.488796
Target:  5'- aGCCGCgGGGGcugcgcgCGGC-GGaacGGCCgCCg -3'
miRNA:   3'- gCGGCGgCCCCaa-----GUCGaCC---CCGG-GG- -5'
6461 5' -65.6 NC_001847.1 + 41816 0.66 0.470968
Target:  5'- -aCCGCgCGGGcGggCGGC-GcGGGUCCCa -3'
miRNA:   3'- gcGGCG-GCCC-CaaGUCGaC-CCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 42975 0.77 0.083134
Target:  5'- gGCCGCCGGccggcccgGGUUC-GCUGucggcGGGCCCCg -3'
miRNA:   3'- gCGGCGGCC--------CCAAGuCGAC-----CCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 43001 0.76 0.099027
Target:  5'- aCGCCGCCGGGGg--GGCgcgccGGGCCgCCg -3'
miRNA:   3'- -GCGGCGGCCCCaagUCGac---CCCGG-GG- -5'
6461 5' -65.6 NC_001847.1 + 43601 0.66 0.479841
Target:  5'- uGgCGCUGGGGccgguGCUGGccacGGCCCUc -3'
miRNA:   3'- gCgGCGGCCCCaagu-CGACC----CCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 44350 0.71 0.224554
Target:  5'- aCGCgCGcCCGGGGcu--GCUGaacGGGCCCCu -3'
miRNA:   3'- -GCG-GC-GGCCCCaaguCGAC---CCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 44933 0.66 0.435496
Target:  5'- uGUCGCUGGGGcgCucgGGCUGGGcgacggcGCgCCg -3'
miRNA:   3'- gCGGCGGCCCCaaG---UCGACCC-------CGgGG- -5'
6461 5' -65.6 NC_001847.1 + 45518 0.71 0.214413
Target:  5'- cCGCCGCCGGGcGgcgCGGaC-GGGGCCgugCCg -3'
miRNA:   3'- -GCGGCGGCCC-Caa-GUC-GaCCCCGG---GG- -5'
6461 5' -65.6 NC_001847.1 + 45865 1.1 0.000293
Target:  5'- uCGCCGCCGGGGUUCAGCUGGGGCCCCa -3'
miRNA:   3'- -GCGGCGGCCCCAAGUCGACCCCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.