miRNA display CGI


Results 21 - 40 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6461 5' -65.6 NC_001847.1 + 126243 0.7 0.257436
Target:  5'- gGgCGuCCGGGGUcgUCGGC-GGGGCgUCCg -3'
miRNA:   3'- gCgGC-GGCCCCA--AGUCGaCCCCG-GGG- -5'
6461 5' -65.6 NC_001847.1 + 126094 0.71 0.231893
Target:  5'- gCGCUGCaCGGGGgggCggagcacaggagcucGGgUGGGGUCCCg -3'
miRNA:   3'- -GCGGCG-GCCCCaa-G---------------UCgACCCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 125997 0.66 0.43974
Target:  5'- gGCUggGCUGGGGUg-GGCUGGgcuaaccuugcggcaGGUCCCu -3'
miRNA:   3'- gCGG--CGGCCCCAagUCGACC---------------CCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 125907 0.66 0.479841
Target:  5'- gGCUggGCUGGGGUgggcUgGGCUGGGGUg-- -3'
miRNA:   3'- gCGG--CGGCCCCA----AgUCGACCCCGggg -5'
6461 5' -65.6 NC_001847.1 + 125877 0.66 0.479841
Target:  5'- gGCUggGCUGGGGUgggcUgGGCUGGGGUg-- -3'
miRNA:   3'- gCGG--CGGCCCCA----AgUCGACCCCGggg -5'
6461 5' -65.6 NC_001847.1 + 125817 0.67 0.40323
Target:  5'- gGCUggGCUGGGGUg-GGCUGGGGUg-- -3'
miRNA:   3'- gCGG--CGGCCCCAagUCGACCCCGggg -5'
6461 5' -65.6 NC_001847.1 + 125757 0.67 0.40323
Target:  5'- gGCUggGCUGGGGUg-GGCUGGGGUg-- -3'
miRNA:   3'- gCGG--CGGCCCCAagUCGACCCCGggg -5'
6461 5' -65.6 NC_001847.1 + 125697 0.76 0.099027
Target:  5'- uCGCCGCCGGGGUUCugcaagagcauGGCUGggcuGGGCUg- -3'
miRNA:   3'- -GCGGCGGCCCCAAG-----------UCGAC----CCCGGgg -5'
6461 5' -65.6 NC_001847.1 + 125229 0.66 0.435496
Target:  5'- cCGCCuGCCGGGcGUacUCGGC-GGccacgagcgcgacGGCCUCg -3'
miRNA:   3'- -GCGG-CGGCCC-CA--AGUCGaCC-------------CCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 124917 0.72 0.19994
Target:  5'- gGCgCGCCGGGGgcgaCAGC-GGGcGCgCCCu -3'
miRNA:   3'- gCG-GCGGCCCCaa--GUCGaCCC-CG-GGG- -5'
6461 5' -65.6 NC_001847.1 + 124773 0.68 0.371754
Target:  5'- gGCa-CCGGGGggggcuUUCGGC-GGcGGCCCCc -3'
miRNA:   3'- gCGgcGGCCCC------AAGUCGaCC-CCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 124657 0.66 0.462178
Target:  5'- gGCCGUCGGGGaagccCAGCUc-GGCCUg -3'
miRNA:   3'- gCGGCGGCCCCaa---GUCGAccCCGGGg -5'
6461 5' -65.6 NC_001847.1 + 124566 0.68 0.371754
Target:  5'- gCGCgCGCgGGGGggccgcCGGCgccGGGCCCg -3'
miRNA:   3'- -GCG-GCGgCCCCaa----GUCGac-CCCGGGg -5'
6461 5' -65.6 NC_001847.1 + 123549 0.73 0.173533
Target:  5'- gGCCGCugcgaaCGGGGcUUgGGCcGGGGCCgCCg -3'
miRNA:   3'- gCGGCG------GCCCC-AAgUCGaCCCCGG-GG- -5'
6461 5' -65.6 NC_001847.1 + 123522 0.66 0.436343
Target:  5'- gGCUGCCGcGGGcUCGGCUaaGGCCa- -3'
miRNA:   3'- gCGGCGGC-CCCaAGUCGAccCCGGgg -5'
6461 5' -65.6 NC_001847.1 + 123474 0.9 0.009547
Target:  5'- gGCCGCCGcGGGcUCGGCUGGGGCCgCCg -3'
miRNA:   3'- gCGGCGGC-CCCaAGUCGACCCCGG-GG- -5'
6461 5' -65.6 NC_001847.1 + 123437 0.66 0.453475
Target:  5'- uGCCGCCGaauGGGUUUgccgGGCUu-GGCCCg -3'
miRNA:   3'- gCGGCGGC---CCCAAG----UCGAccCCGGGg -5'
6461 5' -65.6 NC_001847.1 + 122204 0.66 0.488796
Target:  5'- cCGCCacacuaGCCGGGGccgGGUgcccucaGGGGCgCCCa -3'
miRNA:   3'- -GCGG------CGGCCCCaagUCGa------CCCCG-GGG- -5'
6461 5' -65.6 NC_001847.1 + 120031 0.73 0.181971
Target:  5'- cCGCCGCCGucaGGGccgUCAGCaUGagcgcGGCCCCg -3'
miRNA:   3'- -GCGGCGGC---CCCa--AGUCG-ACc----CCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 120015 0.67 0.419589
Target:  5'- gCGCUGCCcGGGUgagCGGCcuaGGCCCUc -3'
miRNA:   3'- -GCGGCGGcCCCAa--GUCGaccCCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.