miRNA display CGI


Results 41 - 60 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6461 5' -65.6 NC_001847.1 + 119162 0.68 0.341994
Target:  5'- gGCCGCCGcGGggCGGC-GGGGCaggcaugggaCCg -3'
miRNA:   3'- gCGGCGGCcCCaaGUCGaCCCCGg---------GG- -5'
6461 5' -65.6 NC_001847.1 + 119102 0.71 0.2351
Target:  5'- gGCCGCCGcGGggCGGCggggcaggcaUGGGGCCg- -3'
miRNA:   3'- gCGGCGGCcCCaaGUCG----------ACCCCGGgg -5'
6461 5' -65.6 NC_001847.1 + 118674 0.68 0.334828
Target:  5'- gGCaggGCgGGGGUUgGGCcGGGccgcaGCCCCg -3'
miRNA:   3'- gCGg--CGgCCCCAAgUCGaCCC-----CGGGG- -5'
6461 5' -65.6 NC_001847.1 + 118419 0.71 0.219433
Target:  5'- cCGUCGCCuGcGGUcUCGGCgccgUGGGGCUCCu -3'
miRNA:   3'- -GCGGCGGcC-CCA-AGUCG----ACCCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 116389 0.66 0.479841
Target:  5'- nCGCCuuaGCCGcGGcggCGGCgcucuGGGCCCCg -3'
miRNA:   3'- -GCGG---CGGCcCCaa-GUCGac---CCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 116359 0.67 0.419589
Target:  5'- cCGCCGCCGcGGaGcUCGcGCUGucGGCCgCCg -3'
miRNA:   3'- -GCGGCGGC-CC-CaAGU-CGACc-CCGG-GG- -5'
6461 5' -65.6 NC_001847.1 + 115934 0.66 0.479841
Target:  5'- uGCCGUCGGGaacgagcaGGgaGGGGUCgCCg -3'
miRNA:   3'- gCGGCGGCCCcaag----UCgaCCCCGG-GG- -5'
6461 5' -65.6 NC_001847.1 + 115728 0.66 0.488796
Target:  5'- uGCCGCCacGGGcgC-GCUGGuGGCCa- -3'
miRNA:   3'- gCGGCGGc-CCCaaGuCGACC-CCGGgg -5'
6461 5' -65.6 NC_001847.1 + 115687 0.7 0.263285
Target:  5'- gGCUGCgCGGGGgcgagagcCGGCUGcGGCCCg -3'
miRNA:   3'- gCGGCG-GCCCCaa------GUCGACcCCGGGg -5'
6461 5' -65.6 NC_001847.1 + 113539 0.75 0.133107
Target:  5'- gCGCCGCCagcgaguuuaGGGG---GGC-GGGGCCCCg -3'
miRNA:   3'- -GCGGCGG----------CCCCaagUCGaCCCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 113376 0.7 0.263285
Target:  5'- cCGgCGCCGGGcc-CGGCgccGGcGGCCCCc -3'
miRNA:   3'- -GCgGCGGCCCcaaGUCGa--CC-CCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 113019 0.67 0.379465
Target:  5'- cCGCCGCCGGGcccaGggCGcgcccGCUGucGCCCCc -3'
miRNA:   3'- -GCGGCGGCCC----CaaGU-----CGACccCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 111281 0.78 0.077094
Target:  5'- gCGCCggGCCGGGGgcggcgcUCGGCcgggggcGGGGCCCCu -3'
miRNA:   3'- -GCGG--CGGCCCCa------AGUCGa------CCCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 110834 0.67 0.379465
Target:  5'- cCGCuCGCUGGGcaUCGGCUuccaGGGCCUg -3'
miRNA:   3'- -GCG-GCGGCCCcaAGUCGAc---CCCGGGg -5'
6461 5' -65.6 NC_001847.1 + 108595 0.66 0.462178
Target:  5'- gGCUGUCGGGGcUCauuugcaugaaAGCaUGGccgaacgcccccGGCCCCg -3'
miRNA:   3'- gCGGCGGCCCCaAG-----------UCG-ACC------------CCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 108083 0.76 0.106683
Target:  5'- uGCCGcCCGGGG---GGCUGcGGGCCUCu -3'
miRNA:   3'- gCGGC-GGCCCCaagUCGAC-CCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 107777 0.8 0.050076
Target:  5'- uCGCgCGCCcgGGGGggCAGCUGGGGCUgCg -3'
miRNA:   3'- -GCG-GCGG--CCCCaaGUCGACCCCGGgG- -5'
6461 5' -65.6 NC_001847.1 + 107637 0.66 0.444863
Target:  5'- cCGCCGCCGcGGcggCGGCcGaGGCCUCu -3'
miRNA:   3'- -GCGGCGGCcCCaa-GUCGaCcCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 106756 0.68 0.334828
Target:  5'- gCGCCGCggCGGGGggggcgccgUCuccggcgcgagGGCgccgGGGGCCCg -3'
miRNA:   3'- -GCGGCG--GCCCCa--------AG-----------UCGa---CCCCGGGg -5'
6461 5' -65.6 NC_001847.1 + 106640 0.67 0.378689
Target:  5'- gCGCUGCCGGGccacgccucgccaGaaggcgUCAGCaGcGGGCCCUc -3'
miRNA:   3'- -GCGGCGGCCC-------------Ca-----AGUCGaC-CCCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.