miRNA display CGI


Results 61 - 80 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6461 5' -65.6 NC_001847.1 + 105962 0.67 0.427917
Target:  5'- gCGgCGCCGGcGGcgCGGC--GGGCCgCCu -3'
miRNA:   3'- -GCgGCGGCC-CCaaGUCGacCCCGG-GG- -5'
6461 5' -65.6 NC_001847.1 + 105792 0.75 0.117758
Target:  5'- gCGCCGCCGGGGccgCGcGCUGGaGCCgCg -3'
miRNA:   3'- -GCGGCGGCCCCaa-GU-CGACCcCGGgG- -5'
6461 5' -65.6 NC_001847.1 + 105683 0.66 0.470968
Target:  5'- gGCCGCgGGcGGcgcUUCGGCcgcGGGcggcgccacGCCCCa -3'
miRNA:   3'- gCGGCGgCC-CC---AAGUCGa--CCC---------CGGGG- -5'
6461 5' -65.6 NC_001847.1 + 105364 0.67 0.411359
Target:  5'- cCGCCGCCGGGc--CGG--GGcGGCCCUc -3'
miRNA:   3'- -GCGGCGGCCCcaaGUCgaCC-CCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 105115 0.75 0.114893
Target:  5'- gGCCGCCGGG---CGGCauGGGCCCCa -3'
miRNA:   3'- gCGGCGGCCCcaaGUCGacCCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 104876 0.7 0.263285
Target:  5'- gCGCCGCCGcagcGGUggCGGCgagcgccccgcGGGGCCCg -3'
miRNA:   3'- -GCGGCGGCc---CCAa-GUCGa----------CCCCGGGg -5'
6461 5' -65.6 NC_001847.1 + 104826 0.73 0.173533
Target:  5'- cCGCCGCCGGGGg--GGC-GGGcGUCCg -3'
miRNA:   3'- -GCGGCGGCCCCaagUCGaCCC-CGGGg -5'
6461 5' -65.6 NC_001847.1 + 102969 0.79 0.067608
Target:  5'- gGCCgggggGCCGGGGUUCuGCgucuuggcccccGGGGCCCCc -3'
miRNA:   3'- gCGG-----CGGCCCCAAGuCGa-----------CCCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 101378 0.7 0.265655
Target:  5'- gCGCCGCgGGGGcugcccgCGGCgccgccggcaaucgGGGGUCUCg -3'
miRNA:   3'- -GCGGCGgCCCCaa-----GUCGa-------------CCCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 101078 0.71 0.229776
Target:  5'- cCGCCGCgGGGGccgggUCGGC-GGGGCg-- -3'
miRNA:   3'- -GCGGCGgCCCCa----AGUCGaCCCCGggg -5'
6461 5' -65.6 NC_001847.1 + 101022 0.71 0.229776
Target:  5'- uGCCGCCGccg--CGGCcGGGGUCCCa -3'
miRNA:   3'- gCGGCGGCcccaaGUCGaCCCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 100950 0.71 0.2351
Target:  5'- aGCCGCCGcGGUaaCAGC-GGGGCUCg -3'
miRNA:   3'- gCGGCGGCcCCAa-GUCGaCCCCGGGg -5'
6461 5' -65.6 NC_001847.1 + 100866 0.74 0.139749
Target:  5'- gGcCCGCCGGGGgUCGGCggcaGGGGCgCg -3'
miRNA:   3'- gC-GGCGGCCCCaAGUCGa---CCCCGgGg -5'
6461 5' -65.6 NC_001847.1 + 100647 0.66 0.443151
Target:  5'- gCGgCGCCaGGGccgcgcugcugCGGCggGGGGUCCCc -3'
miRNA:   3'- -GCgGCGGcCCCaa---------GUCGa-CCCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 100148 0.71 0.232958
Target:  5'- cCGCgGCCGGGaagagggccgaCAGCgcgGGGGCCgCCa -3'
miRNA:   3'- -GCGgCGGCCCcaa--------GUCGa--CCCCGG-GG- -5'
6461 5' -65.6 NC_001847.1 + 99798 0.67 0.427917
Target:  5'- gCGCCuGUggugCGGGGUcggagCGGCcgGGGGCCgCu -3'
miRNA:   3'- -GCGG-CG----GCCCCAa----GUCGa-CCCCGGgG- -5'
6461 5' -65.6 NC_001847.1 + 99496 0.67 0.395204
Target:  5'- gGCCGCCGaggcggcgcGGUcCAGCgcuGGCCCCa -3'
miRNA:   3'- gCGGCGGCc--------CCAaGUCGaccCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 99319 0.67 0.414639
Target:  5'- cCGcCCGCCGGGGgccgaAGCUaaagggugggcggccGGgcggaucuuGGCCCCu -3'
miRNA:   3'- -GC-GGCGGCCCCaag--UCGA---------------CC---------CCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 99063 0.73 0.173121
Target:  5'- cCGCCaggcCCGGGGccgccucUUCGuGCUGGGGCCUg -3'
miRNA:   3'- -GCGGc---GGCCCC-------AAGU-CGACCCCGGGg -5'
6461 5' -65.6 NC_001847.1 + 98721 0.68 0.371754
Target:  5'- nCGaaGCCGGGGccgaAGCcGGGGCCg- -3'
miRNA:   3'- -GCggCGGCCCCaag-UCGaCCCCGGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.