miRNA display CGI


Results 81 - 100 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6461 5' -65.6 NC_001847.1 + 98659 0.69 0.307269
Target:  5'- gGCCgaaGCCGGGGccgaAGCcGGGGCCg- -3'
miRNA:   3'- gCGG---CGGCCCCaag-UCGaCCCCGGgg -5'
6461 5' -65.6 NC_001847.1 + 98695 0.69 0.307269
Target:  5'- gGCCgaaGCCGGGGccgaAGCcGGGGCCg- -3'
miRNA:   3'- gCGG---CGGCCCCaag-UCGaCCCCGGgg -5'
6461 5' -65.6 NC_001847.1 + 27514 0.69 0.307269
Target:  5'- cCGCCGCCGcGGcggCGGC-GGGGaCgCCCg -3'
miRNA:   3'- -GCGGCGGCcCCaa-GUCGaCCCC-G-GGG- -5'
6461 5' -65.6 NC_001847.1 + 27144 0.69 0.313993
Target:  5'- uGCCGuCCGGGGggcgCAGCcgcGGcGGCcagCCCa -3'
miRNA:   3'- gCGGC-GGCCCCaa--GUCGa--CC-CCG---GGG- -5'
6461 5' -65.6 NC_001847.1 + 134235 0.69 0.313993
Target:  5'- gCGCCGgCGGGcGgcggccggCGGCcgcGGcGGCCCCg -3'
miRNA:   3'- -GCGGCgGCCC-Caa------GUCGa--CC-CCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 32127 0.69 0.320827
Target:  5'- cCGCCGCCGGc-----GCUGGGcGCCgCCg -3'
miRNA:   3'- -GCGGCGGCCccaaguCGACCC-CGG-GG- -5'
6461 5' -65.6 NC_001847.1 + 134909 0.69 0.327772
Target:  5'- gGgCGUCGGGGcgCgaggcccgGGCUcGGGCCCCc -3'
miRNA:   3'- gCgGCGGCCCCaaG--------UCGAcCCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 31061 0.69 0.287762
Target:  5'- uCGCCGCUGuGGGUUuucgcaacCAguacgacgcggcGCUGGGGCCg- -3'
miRNA:   3'- -GCGGCGGC-CCCAA--------GU------------CGACCCCGGgg -5'
6461 5' -65.6 NC_001847.1 + 68444 0.69 0.287762
Target:  5'- aGCgGCCGcagaGGUccgcgcccgCGGCcGGGGCCCCg -3'
miRNA:   3'- gCGgCGGCc---CCAa--------GUCGaCCCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 133165 0.7 0.281479
Target:  5'- cCGCUGcCCGGGGaggcGCUGGcGGCgCCg -3'
miRNA:   3'- -GCGGC-GGCCCCaaguCGACC-CCGgGG- -5'
6461 5' -65.6 NC_001847.1 + 126094 0.71 0.231893
Target:  5'- gCGCUGCaCGGGGgggCggagcacaggagcucGGgUGGGGUCCCg -3'
miRNA:   3'- -GCGGCG-GCCCCaa-G---------------UCgACCCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 100950 0.71 0.2351
Target:  5'- aGCCGCCGcGGUaaCAGC-GGGGCUCg -3'
miRNA:   3'- gCGGCGGCcCCAa-GUCGaCCCCGGGg -5'
6461 5' -65.6 NC_001847.1 + 27213 0.71 0.246058
Target:  5'- gGCgCGCCGGGGcgcUCgAGCUGcGGGUCgCa -3'
miRNA:   3'- gCG-GCGGCCCCa--AG-UCGAC-CCCGGgG- -5'
6461 5' -65.6 NC_001847.1 + 89528 0.7 0.256857
Target:  5'- uGCCGCCGGGcggCAGCgacgGGucagauuGGCCCg -3'
miRNA:   3'- gCGGCGGCCCcaaGUCGa---CC-------CCGGGg -5'
6461 5' -65.6 NC_001847.1 + 126243 0.7 0.257436
Target:  5'- gGgCGuCCGGGGUcgUCGGC-GGGGCgUCCg -3'
miRNA:   3'- gCgGC-GGCCCCA--AGUCGaCCCCG-GGG- -5'
6461 5' -65.6 NC_001847.1 + 104876 0.7 0.263285
Target:  5'- gCGCCGCCGcagcGGUggCGGCgagcgccccgcGGGGCCCg -3'
miRNA:   3'- -GCGGCGGCc---CCAa-GUCGa----------CCCCGGGg -5'
6461 5' -65.6 NC_001847.1 + 113376 0.7 0.263285
Target:  5'- cCGgCGCCGGGcc-CGGCgccGGcGGCCCCc -3'
miRNA:   3'- -GCgGCGGCCCcaaGUCGa--CC-CCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 101378 0.7 0.265655
Target:  5'- gCGCCGCgGGGGcugcccgCGGCgccgccggcaaucgGGGGUCUCg -3'
miRNA:   3'- -GCGGCGgCCCCaa-----GUCGa-------------CCCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 133805 0.7 0.269241
Target:  5'- gGCCGCgCaGGGcgCGgcGCUGGGGCUCg -3'
miRNA:   3'- gCGGCG-GcCCCaaGU--CGACCCCGGGg -5'
6461 5' -65.6 NC_001847.1 + 13113 0.69 0.327772
Target:  5'- uCGCgGCCGGGGcgC-GCgGGcGGCgCCg -3'
miRNA:   3'- -GCGgCGGCCCCaaGuCGaCC-CCGgGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.