Results 21 - 40 of 257 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6461 | 5' | -65.6 | NC_001847.1 | + | 5782 | 0.66 | 0.462178 |
Target: 5'- gGCUGUCGGGGcUCauuugcaugaaAGCaUGGccgaacgcccccGGCCCCg -3' miRNA: 3'- gCGGCGGCCCCaAG-----------UCG-ACC------------CCGGGG- -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 124657 | 0.66 | 0.462178 |
Target: 5'- gGCCGUCGGGGaagccCAGCUc-GGCCUg -3' miRNA: 3'- gCGGCGGCCCCaa---GUCGAccCCGGGg -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 57221 | 0.66 | 0.479841 |
Target: 5'- gGCCGCCGGGGcUCGucGCcgagaGGuGcGCCaCCg -3' miRNA: 3'- gCGGCGGCCCCaAGU--CGa----CC-C-CGG-GG- -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 122204 | 0.66 | 0.488796 |
Target: 5'- cCGCCacacuaGCCGGGGccgGGUgcccucaGGGGCgCCCa -3' miRNA: 3'- -GCGG------CGGCCCCaagUCGa------CCCCG-GGG- -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 44933 | 0.66 | 0.435496 |
Target: 5'- uGUCGCUGGGGcgCucgGGCUGGGcgacggcGCgCCg -3' miRNA: 3'- gCGGCGGCCCCaaG---UCGACCC-------CGgGG- -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 82548 | 0.66 | 0.444863 |
Target: 5'- gCGCCGcCCGcGGGcUCGGCcucGGCCgCCg -3' miRNA: 3'- -GCGGC-GGC-CCCaAGUCGaccCCGG-GG- -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 29902 | 0.66 | 0.470968 |
Target: 5'- gGCCcuGCCGGccg-CcGCggGGGGCCCCu -3' miRNA: 3'- gCGG--CGGCCccaaGuCGa-CCCCGGGG- -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 129150 | 0.66 | 0.488796 |
Target: 5'- gGUCGCCGuuGUUCGGCUGcc-CCCCg -3' miRNA: 3'- gCGGCGGCccCAAGUCGACcccGGGG- -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 107637 | 0.66 | 0.444863 |
Target: 5'- cCGCCGCCGcGGcggCGGCcGaGGCCUCu -3' miRNA: 3'- -GCGGCGGCcCCaa-GUCGaCcCCGGGG- -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 57398 | 0.66 | 0.488796 |
Target: 5'- -aCCGCUGGGGUaggUCcgGGC--GGGCCUCg -3' miRNA: 3'- gcGGCGGCCCCA---AG--UCGacCCCGGGG- -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 60010 | 0.66 | 0.462178 |
Target: 5'- -aCCGCCGGccc-CGGC-GGGGCCCg -3' miRNA: 3'- gcGGCGGCCccaaGUCGaCCCCGGGg -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 123437 | 0.66 | 0.453475 |
Target: 5'- uGCCGCCGaauGGGUUUgccgGGCUu-GGCCCg -3' miRNA: 3'- gCGGCGGC---CCCAAG----UCGAccCCGGGg -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 13106 | 0.66 | 0.470968 |
Target: 5'- aCGCCGCCGuccuccUCGGCUGcGGCCgCg -3' miRNA: 3'- -GCGGCGGCccca--AGUCGACcCCGGgG- -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 50347 | 0.66 | 0.479841 |
Target: 5'- uGCCGCUaGGGUaaAGCUGGcgcuGGCCg- -3' miRNA: 3'- gCGGCGGcCCCAagUCGACC----CCGGgg -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 49813 | 0.66 | 0.488796 |
Target: 5'- uGCUGCUGGGcg-C-GCUGGcGGCCUg -3' miRNA: 3'- gCGGCGGCCCcaaGuCGACC-CCGGGg -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 115728 | 0.66 | 0.488796 |
Target: 5'- uGCCGCCacGGGcgC-GCUGGuGGCCa- -3' miRNA: 3'- gCGGCGGc-CCCaaGuCGACC-CCGGgg -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 116359 | 0.67 | 0.419589 |
Target: 5'- cCGCCGCCGcGGaGcUCGcGCUGucGGCCgCCg -3' miRNA: 3'- -GCGGCGGC-CC-CaAGU-CGACc-CCGG-GG- -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 59523 | 0.66 | 0.432961 |
Target: 5'- uCGCCGUCGuGGGgcggcaucgcggCAGCUGgcuggugcuGGGCCUg -3' miRNA: 3'- -GCGGCGGC-CCCaa----------GUCGAC---------CCCGGGg -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 54465 | 0.66 | 0.436343 |
Target: 5'- cCGCCGCCGGcGcgCAGCcGuucGGCUCCc -3' miRNA: 3'- -GCGGCGGCCcCaaGUCGaCc--CCGGGG- -5' |
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6461 | 5' | -65.6 | NC_001847.1 | + | 53711 | 0.66 | 0.444863 |
Target: 5'- gCGCCGCCGGcGGcUC-GC-GGGGCg-- -3' miRNA: 3'- -GCGGCGGCC-CCaAGuCGaCCCCGggg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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