miRNA display CGI


Results 61 - 80 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6461 5' -65.6 NC_001847.1 + 59523 0.66 0.432961
Target:  5'- uCGCCGUCGuGGGgcggcaucgcggCAGCUGgcuggugcuGGGCCUg -3'
miRNA:   3'- -GCGGCGGC-CCCaa----------GUCGAC---------CCCGGGg -5'
6461 5' -65.6 NC_001847.1 + 86979 0.67 0.419589
Target:  5'- aCGCCGCCGGccGGgcCGGCgcgcgccGGCCCg -3'
miRNA:   3'- -GCGGCGGCC--CCaaGUCGacc----CCGGGg -5'
6461 5' -65.6 NC_001847.1 + 81229 0.66 0.488796
Target:  5'- uCGCCGUcgccuccgggCGGGGccgUC-GCgaggacggGGGGCCCg -3'
miRNA:   3'- -GCGGCG----------GCCCCa--AGuCGa-------CCCCGGGg -5'
6461 5' -65.6 NC_001847.1 + 34088 0.66 0.488796
Target:  5'- gGCC-CCGGGGccggccUCGGCgggugcgcaaauUGGGaCCCCg -3'
miRNA:   3'- gCGGcGGCCCCa-----AGUCG------------ACCCcGGGG- -5'
6461 5' -65.6 NC_001847.1 + 23094 0.66 0.479841
Target:  5'- gGCUggGCUGGGGUgggcUgGGCUGGGGUg-- -3'
miRNA:   3'- gCGG--CGGCCCCA----AgUCGACCCCGggg -5'
6461 5' -65.6 NC_001847.1 + 105683 0.66 0.470968
Target:  5'- gGCCGCgGGcGGcgcUUCGGCcgcGGGcggcgccacGCCCCa -3'
miRNA:   3'- gCGGCGgCC-CC---AAGUCGa--CCC---------CGGGG- -5'
6461 5' -65.6 NC_001847.1 + 90326 0.66 0.462178
Target:  5'- gGCCGCCGGGGccg----GGGGCgCa -3'
miRNA:   3'- gCGGCGGCCCCaagucgaCCCCGgGg -5'
6461 5' -65.6 NC_001847.1 + 123437 0.66 0.453475
Target:  5'- uGCCGCCGaauGGGUUUgccgGGCUu-GGCCCg -3'
miRNA:   3'- gCGGCGGC---CCCAAG----UCGAccCCGGGg -5'
6461 5' -65.6 NC_001847.1 + 82548 0.66 0.444863
Target:  5'- gCGCCGcCCGcGGGcUCGGCcucGGCCgCCg -3'
miRNA:   3'- -GCGGC-GGC-CCCaAGUCGaccCCGG-GG- -5'
6461 5' -65.6 NC_001847.1 + 47694 0.66 0.43719
Target:  5'- gCGCCGCgGGGccGUUgAGCgcgcgcagcagcucUucgagcgcggcgggcGGGGCCCCg -3'
miRNA:   3'- -GCGGCGgCCC--CAAgUCG--------------A---------------CCCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 32096 0.69 0.327772
Target:  5'- gGgCGUCGGGGcgCgaggcccgGGCUcGGGCCCCc -3'
miRNA:   3'- gCgGCGGCCCCaaG--------UCGAcCCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 29199 0.68 0.334828
Target:  5'- gCGCCGCCGGGcucccgGUgcucUCGGCcgcgGcGGGCCgCg -3'
miRNA:   3'- -GCGGCGGCCC------CA----AGUCGa---C-CCCGGgG- -5'
6461 5' -65.6 NC_001847.1 + 13462 0.67 0.411359
Target:  5'- aGCCGagcCCGGGGuUUCGGUcgcgGGcuuGGCCUCg -3'
miRNA:   3'- gCGGC---GGCCCC-AAGUCGa---CC---CCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 23004 0.67 0.40323
Target:  5'- gGCUggGCUGGGGUg-GGCUGGGGUg-- -3'
miRNA:   3'- gCGG--CGGCCCCAagUCGACCCCGggg -5'
6461 5' -65.6 NC_001847.1 + 95640 0.67 0.394407
Target:  5'- gGCCGCucuggcgCGGGGggCGGC-GcGGGCCgCu -3'
miRNA:   3'- gCGGCG-------GCCCCaaGUCGaC-CCCGGgG- -5'
6461 5' -65.6 NC_001847.1 + 66297 0.67 0.387282
Target:  5'- aGgCGCCGGauuuaacUCAGCgcccGGGGCCCUu -3'
miRNA:   3'- gCgGCGGCCcca----AGUCGa---CCCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 76174 0.67 0.379465
Target:  5'- uCGCUGCagcaGGaGGUgagcCAGCUGaGGGCCg- -3'
miRNA:   3'- -GCGGCGg---CC-CCAa---GUCGAC-CCCGGgg -5'
6461 5' -65.6 NC_001847.1 + 21960 0.68 0.371754
Target:  5'- gGCa-CCGGGGggggcuUUCGGC-GGcGGCCCCc -3'
miRNA:   3'- gCGgcGGCCCC------AAGUCGaCC-CCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 11530 0.68 0.364151
Target:  5'- aGCCGCCGGGugcugcGUUCGcGuCUGGaGuGCgCCCa -3'
miRNA:   3'- gCGGCGGCCC------CAAGU-C-GACC-C-CG-GGG- -5'
6461 5' -65.6 NC_001847.1 + 119162 0.68 0.341994
Target:  5'- gGCCGCCGcGGggCGGC-GGGGCaggcaugggaCCg -3'
miRNA:   3'- gCGGCGGCcCCaaGUCGaCCCCGg---------GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.