miRNA display CGI


Results 81 - 100 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6461 5' -65.6 NC_001847.1 + 33009 0.67 0.40323
Target:  5'- aGCgGCCGGGGggCGcGC-GGGGCg-- -3'
miRNA:   3'- gCGgCGGCCCCaaGU-CGaCCCCGggg -5'
6461 5' -65.6 NC_001847.1 + 95748 0.67 0.394407
Target:  5'- gGCCGCucuggcgCGGGGggCGGC-GcGGGCCgCu -3'
miRNA:   3'- gCGGCG-------GCCCCaaGUCGaC-CCCGGgG- -5'
6461 5' -65.6 NC_001847.1 + 60147 0.67 0.387282
Target:  5'- cCGcCCGCCGGcGGacUgAGcCUGGcGCCCCg -3'
miRNA:   3'- -GC-GGCGGCC-CCa-AgUC-GACCcCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 10206 0.67 0.379465
Target:  5'- cCGCCGCCGGGcccaGggCGcgcccGCUGucGCCCCc -3'
miRNA:   3'- -GCGGCGGCCC----CaaGU-----CGACccCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 3827 0.67 0.378689
Target:  5'- gCGCUGCCGGGccacgccucgccaGaaggcgUCAGCaGcGGGCCCUc -3'
miRNA:   3'- -GCGGCGGCCC-------------Ca-----AGUCGaC-CCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 11530 0.68 0.364151
Target:  5'- aGCCGCCGGGugcugcGUUCGcGuCUGGaGuGCgCCCa -3'
miRNA:   3'- gCGGCGGCCC------CAAGU-C-GACC-C-CG-GGG- -5'
6461 5' -65.6 NC_001847.1 + 119162 0.68 0.341994
Target:  5'- gGCCGCCGcGGggCGGC-GGGGCaggcaugggaCCg -3'
miRNA:   3'- gCGGCGGCcCCaaGUCGaCCCCGg---------GG- -5'
6461 5' -65.6 NC_001847.1 + 47694 0.66 0.43719
Target:  5'- gCGCCGCgGGGccGUUgAGCgcgcgcagcagcucUucgagcgcggcgggcGGGGCCCCg -3'
miRNA:   3'- -GCGGCGgCCC--CAAgUCG--------------A---------------CCCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 82548 0.66 0.444863
Target:  5'- gCGCCGcCCGcGGGcUCGGCcucGGCCgCCg -3'
miRNA:   3'- -GCGGC-GGC-CCCaAGUCGaccCCGG-GG- -5'
6461 5' -65.6 NC_001847.1 + 123437 0.66 0.453475
Target:  5'- uGCCGCCGaauGGGUUUgccgGGCUu-GGCCCg -3'
miRNA:   3'- gCGGCGGC---CCCAAG----UCGAccCCGGGg -5'
6461 5' -65.6 NC_001847.1 + 31422 0.69 0.313993
Target:  5'- gCGCCGgCGGGcGgcggccggCGGCcgcGGcGGCCCCg -3'
miRNA:   3'- -GCGGCgGCCC-Caa------GUCGa--CC-CCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 51580 0.69 0.287762
Target:  5'- gCGgCGCCGGGGcagccgUCGGgaGGGcaguGCUCCa -3'
miRNA:   3'- -GCgGCGGCCCCa-----AGUCgaCCC----CGGGG- -5'
6461 5' -65.6 NC_001847.1 + 30992 0.7 0.269241
Target:  5'- gGCCGCgCaGGGcgCGgcGCUGGGGCUCg -3'
miRNA:   3'- gCGGCG-GcCCCaaGU--CGACCCCGGGg -5'
6461 5' -65.6 NC_001847.1 + 2063 0.7 0.263285
Target:  5'- gCGCCGCCGcagcGGUggCGGCgagcgccccgcGGGGCCCg -3'
miRNA:   3'- -GCGGCGGCc---CCAa-GUCGa----------CCCCGGGg -5'
6461 5' -65.6 NC_001847.1 + 17784 0.7 0.257436
Target:  5'- gGCCGCUa-GGUUCAGgacGGGCCCCa -3'
miRNA:   3'- gCGGCGGccCCAAGUCgacCCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 81229 0.66 0.488796
Target:  5'- uCGCCGUcgccuccgggCGGGGccgUC-GCgaggacggGGGGCCCg -3'
miRNA:   3'- -GCGGCG----------GCCCCa--AGuCGa-------CCCCGGGg -5'
6461 5' -65.6 NC_001847.1 + 34088 0.66 0.488796
Target:  5'- gGCC-CCGGGGccggccUCGGCgggugcgcaaauUGGGaCCCCg -3'
miRNA:   3'- gCGGcGGCCCCa-----AGUCG------------ACCCcGGGG- -5'
6461 5' -65.6 NC_001847.1 + 23094 0.66 0.479841
Target:  5'- gGCUggGCUGGGGUgggcUgGGCUGGGGUg-- -3'
miRNA:   3'- gCGG--CGGCCCCA----AgUCGACCCCGggg -5'
6461 5' -65.6 NC_001847.1 + 105683 0.66 0.470968
Target:  5'- gGCCGCgGGcGGcgcUUCGGCcgcGGGcggcgccacGCCCCa -3'
miRNA:   3'- gCGGCGgCC-CC---AAGUCGa--CCC---------CGGGG- -5'
6461 5' -65.6 NC_001847.1 + 90326 0.66 0.462178
Target:  5'- gGCCGCCGGGGccg----GGGGCgCa -3'
miRNA:   3'- gCGGCGGCCCCaagucgaCCCCGgGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.