miRNA display CGI


Results 1 - 20 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6461 5' -65.6 NC_001847.1 + 124917 0.72 0.19994
Target:  5'- gGCgCGCCGGGGgcgaCAGC-GGGcGCgCCCu -3'
miRNA:   3'- gCG-GCGGCCCCaa--GUCGaCCC-CG-GGG- -5'
6461 5' -65.6 NC_001847.1 + 113539 0.75 0.133107
Target:  5'- gCGCCGCCagcgaguuuaGGGG---GGC-GGGGCCCCg -3'
miRNA:   3'- -GCGGCGG----------CCCCaagUCGaCCCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 100866 0.74 0.139749
Target:  5'- gGcCCGCCGGGGgUCGGCggcaGGGGCgCg -3'
miRNA:   3'- gC-GGCGGCCCCaAGUCGa---CCCCGgGg -5'
6461 5' -65.6 NC_001847.1 + 132323 0.74 0.15395
Target:  5'- cCGCCGgCGGaGGUgccggcgCGGCUGGcGGCCgCg -3'
miRNA:   3'- -GCGGCgGCC-CCAa------GUCGACC-CCGGgG- -5'
6461 5' -65.6 NC_001847.1 + 99063 0.73 0.173121
Target:  5'- cCGCCaggcCCGGGGccgccucUUCGuGCUGGGGCCUg -3'
miRNA:   3'- -GCGGc---GGCCCC-------AAGU-CGACCCCGGGg -5'
6461 5' -65.6 NC_001847.1 + 9811 0.73 0.177708
Target:  5'- gGCCGCUGGcGUUCAGCgc-GGCUCCg -3'
miRNA:   3'- gCGGCGGCCcCAAGUCGaccCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 70764 0.72 0.19077
Target:  5'- gGCCGuuGGGGacCGGCuaguguuuuUGGaGGCCCUa -3'
miRNA:   3'- gCGGCggCCCCaaGUCG---------ACC-CCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 134380 0.72 0.19077
Target:  5'- gCGCCGCCGGcGGcgggcCGGCcucgcccuaggGGGGCCCg -3'
miRNA:   3'- -GCGGCGGCC-CCaa---GUCGa----------CCCCGGGg -5'
6461 5' -65.6 NC_001847.1 + 85101 0.72 0.195308
Target:  5'- gGCCGCCGGccaGGUUgaucaucaCGGCgcgcccGGGGCCCa -3'
miRNA:   3'- gCGGCGGCC---CCAA--------GUCGa-----CCCCGGGg -5'
6461 5' -65.6 NC_001847.1 + 53875 0.75 0.12069
Target:  5'- cCGaCCGCCGcGGGggCGGC--GGGCCCCc -3'
miRNA:   3'- -GC-GGCGGC-CCCaaGUCGacCCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 105792 0.75 0.117758
Target:  5'- gCGCCGCCGGGGccgCGcGCUGGaGCCgCg -3'
miRNA:   3'- -GCGGCGGCCCCaa-GU-CGACCcCGGgG- -5'
6461 5' -65.6 NC_001847.1 + 105115 0.75 0.114893
Target:  5'- gGCCGCCGGG---CGGCauGGGCCCCa -3'
miRNA:   3'- gCGGCGGCCCcaaGUCGacCCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 102969 0.79 0.067608
Target:  5'- gGCCgggggGCCGGGGUUCuGCgucuuggcccccGGGGCCCCc -3'
miRNA:   3'- gCGG-----CGGCCCCAAGuCGa-----------CCCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 76401 0.78 0.073303
Target:  5'- gGgCGCCGGGGgccgCGGCgGGGGCaCCCc -3'
miRNA:   3'- gCgGCGGCCCCaa--GUCGaCCCCG-GGG- -5'
6461 5' -65.6 NC_001847.1 + 111281 0.78 0.077094
Target:  5'- gCGCCggGCCGGGGgcggcgcUCGGCcgggggcGGGGCCCCu -3'
miRNA:   3'- -GCGG--CGGCCCCa------AGUCGa------CCCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 134944 0.77 0.089623
Target:  5'- gGgCGCCGGGGgcgggGGCgggggcgGGGGCCCCg -3'
miRNA:   3'- gCgGCGGCCCCaag--UCGa------CCCCGGGG- -5'
6461 5' -65.6 NC_001847.1 + 43001 0.76 0.099027
Target:  5'- aCGCCGCCGGGGg--GGCgcgccGGGCCgCCg -3'
miRNA:   3'- -GCGGCGGCCCCaagUCGac---CCCGG-GG- -5'
6461 5' -65.6 NC_001847.1 + 125697 0.76 0.099027
Target:  5'- uCGCCGCCGGGGUUCugcaagagcauGGCUGggcuGGGCUg- -3'
miRNA:   3'- -GCGGCGGCCCCAAG-----------UCGAC----CCCGGgg -5'
6461 5' -65.6 NC_001847.1 + 35622 0.76 0.104071
Target:  5'- cCGCCGCCGGcGGc---GCUGGGGCCa- -3'
miRNA:   3'- -GCGGCGGCC-CCaaguCGACCCCGGgg -5'
6461 5' -65.6 NC_001847.1 + 130232 0.76 0.111816
Target:  5'- uGCCGCCGGcgcggucGGUgucguucgCAGCggcgcgGGGGCCCUg -3'
miRNA:   3'- gCGGCGGCC-------CCAa-------GUCGa-----CCCCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.