miRNA display CGI


Results 1 - 20 of 192 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6463 3' -66.1 NC_001847.1 + 35618 0.66 0.451752
Target:  5'- cUAGCGCCUCucgcgCCGCGGccGCGUCgCGc -3'
miRNA:   3'- aGUCGCGGGG-----GGCGCCacCGCAGgGU- -5'
6463 3' -66.1 NC_001847.1 + 112769 0.66 0.451752
Target:  5'- -gGGCGCUucugCCCCGaGGacUGGCGcCCCGa -3'
miRNA:   3'- agUCGCGG----GGGGCgCC--ACCGCaGGGU- -5'
6463 3' -66.1 NC_001847.1 + 60865 0.66 0.451752
Target:  5'- -gGGCGUCCagCGCGG-GGCGgccgcgCCCGg -3'
miRNA:   3'- agUCGCGGGggGCGCCaCCGCa-----GGGU- -5'
6463 3' -66.1 NC_001847.1 + 18754 0.66 0.451752
Target:  5'- -gAGCGCCgCCgCCGCGGcuaaGGCGgcggCCg- -3'
miRNA:   3'- agUCGCGG-GG-GGCGCCa---CCGCa---GGgu -5'
6463 3' -66.1 NC_001847.1 + 92639 0.66 0.451752
Target:  5'- aCGGCGCgCCCgGCGGUuuCG-CCCGc -3'
miRNA:   3'- aGUCGCGgGGGgCGCCAccGCaGGGU- -5'
6463 3' -66.1 NC_001847.1 + 133186 0.66 0.451752
Target:  5'- gCGGCGCCgCCCgGCGaGgacgagcgccGGCGgCCCGa -3'
miRNA:   3'- aGUCGCGG-GGGgCGC-Ca---------CCGCaGGGU- -5'
6463 3' -66.1 NC_001847.1 + 33209 0.66 0.451752
Target:  5'- gCAGCGCCUCggCCGCGagcGCGUCCa- -3'
miRNA:   3'- aGUCGCGGGG--GGCGCcacCGCAGGgu -5'
6463 3' -66.1 NC_001847.1 + 118196 0.66 0.451752
Target:  5'- gUCGGgGUCgUCCUGCGGcagguuuccgcUGGCGcUCCCGg -3'
miRNA:   3'- -AGUCgCGG-GGGGCGCC-----------ACCGC-AGGGU- -5'
6463 3' -66.1 NC_001847.1 + 104929 0.66 0.451752
Target:  5'- gCGGCGCCgCCCgGCGaGgacgagcgccGGCGgCCCGa -3'
miRNA:   3'- aGUCGCGG-GGGgCGC-Ca---------CCGCaGGGU- -5'
6463 3' -66.1 NC_001847.1 + 101118 0.66 0.451752
Target:  5'- cUCGGCGCCgagCCCCGCuGUuaccgcGGCGgcuaCCAg -3'
miRNA:   3'- -AGUCGCGG---GGGGCGcCA------CCGCag--GGU- -5'
6463 3' -66.1 NC_001847.1 + 55031 0.66 0.449162
Target:  5'- gCAGgGCCUCCuucaugaagcggugCGCgucaaaGGUGGCGUCCgAg -3'
miRNA:   3'- aGUCgCGGGGG--------------GCG------CCACCGCAGGgU- -5'
6463 3' -66.1 NC_001847.1 + 4942 0.66 0.44658
Target:  5'- --cGCGCCCUCCGCGccgcccgucucuucaGgccgGGCG-CCCGc -3'
miRNA:   3'- aguCGCGGGGGGCGC---------------Ca---CCGCaGGGU- -5'
6463 3' -66.1 NC_001847.1 + 44819 0.66 0.443151
Target:  5'- gCuGCGCCCCCgGCcccGGCGgcCCCAc -3'
miRNA:   3'- aGuCGCGGGGGgCGccaCCGCa-GGGU- -5'
6463 3' -66.1 NC_001847.1 + 32280 0.66 0.443151
Target:  5'- --cGCGCCgUCCGC-GUGGCGcggCCCc -3'
miRNA:   3'- aguCGCGGgGGGCGcCACCGCa--GGGu -5'
6463 3' -66.1 NC_001847.1 + 42747 0.66 0.443151
Target:  5'- -uGGCGCCCCCCuG-GGUGGCcgaCUAc -3'
miRNA:   3'- agUCGCGGGGGG-CgCCACCGcagGGU- -5'
6463 3' -66.1 NC_001847.1 + 12022 0.66 0.443151
Target:  5'- cCAGCGCCCCUCugcccgGCGGagcgcUGGaCG-CCCu -3'
miRNA:   3'- aGUCGCGGGGGG------CGCC-----ACC-GCaGGGu -5'
6463 3' -66.1 NC_001847.1 + 85514 0.66 0.443151
Target:  5'- gUCGGCGUCUCCaaaaacagCGCcgGGUGGCGcgcgccgagcUCCCGc -3'
miRNA:   3'- -AGUCGCGGGGG--------GCG--CCACCGC----------AGGGU- -5'
6463 3' -66.1 NC_001847.1 + 39987 0.66 0.443151
Target:  5'- --cGCGCCCCCCGCcaugccGGCaccCCCAa -3'
miRNA:   3'- aguCGCGGGGGGCGcca---CCGca-GGGU- -5'
6463 3' -66.1 NC_001847.1 + 95468 0.66 0.443151
Target:  5'- -gAGCGCUUCCUGC-GUGGCGcgCgCCAg -3'
miRNA:   3'- agUCGCGGGGGGCGcCACCGCa-G-GGU- -5'
6463 3' -66.1 NC_001847.1 + 62651 0.66 0.443151
Target:  5'- -uGGcCGCCaCCCCGCGGccgcccgccGGCGaCCCc -3'
miRNA:   3'- agUC-GCGG-GGGGCGCCa--------CCGCaGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.