miRNA display CGI


Results 21 - 40 of 192 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6463 3' -66.1 NC_001847.1 + 95468 0.66 0.443151
Target:  5'- -gAGCGCUUCCUGC-GUGGCGcgCgCCAg -3'
miRNA:   3'- agUCGCGGGGGGCGcCACCGCa-G-GGU- -5'
6463 3' -66.1 NC_001847.1 + 21370 0.66 0.443151
Target:  5'- gCAGCGCgCggUCGCGGcGGCGUCUCc -3'
miRNA:   3'- aGUCGCGgGg-GGCGCCaCCGCAGGGu -5'
6463 3' -66.1 NC_001847.1 + 52756 0.66 0.434645
Target:  5'- -aGGCGCCgCCCGCGGgcucGGCcUCggCCGc -3'
miRNA:   3'- agUCGCGGgGGGCGCCa---CCGcAG--GGU- -5'
6463 3' -66.1 NC_001847.1 + 12281 0.66 0.434645
Target:  5'- -gAGCGCgCCCCGgaaGGgGGUGcCCCGc -3'
miRNA:   3'- agUCGCGgGGGGCg--CCaCCGCaGGGU- -5'
6463 3' -66.1 NC_001847.1 + 105055 0.66 0.434645
Target:  5'- --cGCGCgggCCCCGCGG-GGCGcUCgCCGc -3'
miRNA:   3'- aguCGCGg--GGGGCGCCaCCGC-AG-GGU- -5'
6463 3' -66.1 NC_001847.1 + 103738 0.66 0.434645
Target:  5'- cCGGCGCCgCCgGCGGcgGGcCGgccucgCCCu -3'
miRNA:   3'- aGUCGCGGgGGgCGCCa-CC-GCa-----GGGu -5'
6463 3' -66.1 NC_001847.1 + 134377 0.66 0.434645
Target:  5'- cCGGCGCCgCCgGCGGcgGGcCGgccucgCCCu -3'
miRNA:   3'- aGUCGCGGgGGgCGCCa-CC-GCa-----GGGu -5'
6463 3' -66.1 NC_001847.1 + 133060 0.66 0.434645
Target:  5'- --cGCGCgggCCCCGCGG-GGCGcUCgCCGc -3'
miRNA:   3'- aguCGCGg--GGGGCGCCaCCGC-AG-GGU- -5'
6463 3' -66.1 NC_001847.1 + 61401 0.66 0.434645
Target:  5'- cCGGCGCuuggaacugCCCUCGCGGgaGGCG-CUCGa -3'
miRNA:   3'- aGUCGCG---------GGGGGCGCCa-CCGCaGGGU- -5'
6463 3' -66.1 NC_001847.1 + 78285 0.66 0.434645
Target:  5'- cCGGCGCgCgCCCGCuuuUGGCG-CCCGc -3'
miRNA:   3'- aGUCGCGgG-GGGCGcc-ACCGCaGGGU- -5'
6463 3' -66.1 NC_001847.1 + 82249 0.66 0.434645
Target:  5'- -aGGCGCCCUCCgGCGacGGCGUCagaCGc -3'
miRNA:   3'- agUCGCGGGGGG-CGCcaCCGCAGg--GU- -5'
6463 3' -66.1 NC_001847.1 + 121375 0.66 0.434645
Target:  5'- cUCGGUGCCgCgCCGCGGcaggggGGcCGcCCCGc -3'
miRNA:   3'- -AGUCGCGGgG-GGCGCCa-----CC-GCaGGGU- -5'
6463 3' -66.1 NC_001847.1 + 75863 0.66 0.434645
Target:  5'- gCGGUGUUgCgCGCGGcGGCGUCCa- -3'
miRNA:   3'- aGUCGCGGgGgGCGCCaCCGCAGGgu -5'
6463 3' -66.1 NC_001847.1 + 18111 0.66 0.426233
Target:  5'- cUCGGCGagCCCCCGcCGGgcagacagGaGCG-CCCAg -3'
miRNA:   3'- -AGUCGCg-GGGGGC-GCCa-------C-CGCaGGGU- -5'
6463 3' -66.1 NC_001847.1 + 38131 0.66 0.426233
Target:  5'- --cGCuGCCCCCCGCGGccaGCGcCgCCGa -3'
miRNA:   3'- aguCG-CGGGGGGCGCCac-CGCaG-GGU- -5'
6463 3' -66.1 NC_001847.1 + 61921 0.66 0.426233
Target:  5'- cCGcCGCCCCCCuccuccgcgucaGCGGcGGCGcggCCCGc -3'
miRNA:   3'- aGUcGCGGGGGG------------CGCCaCCGCa--GGGU- -5'
6463 3' -66.1 NC_001847.1 + 31949 0.66 0.426233
Target:  5'- gCGGacgaGCCUgCCGCGGcGGCGgcgggCCCc -3'
miRNA:   3'- aGUCg---CGGGgGGCGCCaCCGCa----GGGu -5'
6463 3' -66.1 NC_001847.1 + 11482 0.66 0.426233
Target:  5'- cCGGCGCCagccgCCCGcCGGccucggcgGGCGcgCCCAu -3'
miRNA:   3'- aGUCGCGGg----GGGC-GCCa-------CCGCa-GGGU- -5'
6463 3' -66.1 NC_001847.1 + 21666 0.66 0.426233
Target:  5'- --cGCGgCCCCCGCcGaGGCGcgCCCGg -3'
miRNA:   3'- aguCGCgGGGGGCGcCaCCGCa-GGGU- -5'
6463 3' -66.1 NC_001847.1 + 69761 0.66 0.425397
Target:  5'- --cGCGCCgCUcguuuuauacucaCGCGGUGGCGUCaCAc -3'
miRNA:   3'- aguCGCGGgGG-------------GCGCCACCGCAGgGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.