miRNA display CGI


Results 1 - 20 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6463 5' -51.9 NC_001847.1 + 35810 0.66 0.979929
Target:  5'- -------cGUCGGCCGcCGAGGCGGCGc -3'
miRNA:   3'- uaaacaacCGGCUGGU-GCUUUGCCGU- -5'
6463 5' -51.9 NC_001847.1 + 29463 0.66 0.979929
Target:  5'- ------cGGCCGAagcgccgcCCGCGGccgaGGCGGCAc -3'
miRNA:   3'- uaaacaaCCGGCU--------GGUGCU----UUGCCGU- -5'
6463 5' -51.9 NC_001847.1 + 86425 0.66 0.979929
Target:  5'- gAUUUGUUGGCgGcGCUGCGcgGCgcgGGCAg -3'
miRNA:   3'- -UAAACAACCGgC-UGGUGCuuUG---CCGU- -5'
6463 5' -51.9 NC_001847.1 + 59995 0.66 0.979929
Target:  5'- -----cUGGCCGGugccCCGCGAGGCgcuGGCGc -3'
miRNA:   3'- uaaacaACCGGCU----GGUGCUUUG---CCGU- -5'
6463 5' -51.9 NC_001847.1 + 61808 0.66 0.979929
Target:  5'- -----aUGG-CGGCCGCGGuGGCGGCGc -3'
miRNA:   3'- uaaacaACCgGCUGGUGCU-UUGCCGU- -5'
6463 5' -51.9 NC_001847.1 + 89295 0.66 0.9797
Target:  5'- -gUUGacgGGCacgagcgcgcgcaCGACCAcCGggGCGGCGc -3'
miRNA:   3'- uaAACaa-CCG-------------GCUGGU-GCuuUGCCGU- -5'
6463 5' -51.9 NC_001847.1 + 17731 0.66 0.977547
Target:  5'- ------cGGCuCGGCgUACGAGGCGGCc -3'
miRNA:   3'- uaaacaaCCG-GCUG-GUGCUUUGCCGu -5'
6463 5' -51.9 NC_001847.1 + 44524 0.66 0.977547
Target:  5'- -----cUGGCCGccguCCGCGAGcucGCGGUg -3'
miRNA:   3'- uaaacaACCGGCu---GGUGCUU---UGCCGu -5'
6463 5' -51.9 NC_001847.1 + 107884 0.66 0.977547
Target:  5'- ------cGGCgGGCCGgGAGcggGCGGCAg -3'
miRNA:   3'- uaaacaaCCGgCUGGUgCUU---UGCCGU- -5'
6463 5' -51.9 NC_001847.1 + 8450 0.66 0.977547
Target:  5'- ------cGGCCGugUAUGgcAUGGCAa -3'
miRNA:   3'- uaaacaaCCGGCugGUGCuuUGCCGU- -5'
6463 5' -51.9 NC_001847.1 + 24412 0.66 0.977547
Target:  5'- --gUGgcGGCCG-CCGUGGAcagaGCGGCAa -3'
miRNA:   3'- uaaACaaCCGGCuGGUGCUU----UGCCGU- -5'
6463 5' -51.9 NC_001847.1 + 84237 0.66 0.977547
Target:  5'- ------gGGCCG-CCGCGGgggaggagGGCGGCGa -3'
miRNA:   3'- uaaacaaCCGGCuGGUGCU--------UUGCCGU- -5'
6463 5' -51.9 NC_001847.1 + 68316 0.66 0.977547
Target:  5'- ------aGGCgGGCUGCGgcGCGGCGc -3'
miRNA:   3'- uaaacaaCCGgCUGGUGCuuUGCCGU- -5'
6463 5' -51.9 NC_001847.1 + 130231 0.66 0.977547
Target:  5'- ------cGGCgGGCCGgGAGcggGCGGCAg -3'
miRNA:   3'- uaaacaaCCGgCUGGUgCUU---UGCCGU- -5'
6463 5' -51.9 NC_001847.1 + 85663 0.66 0.977547
Target:  5'- uUUUGgagacGCCGACCAC--AGCGGCc -3'
miRNA:   3'- uAAACaac--CGGCUGGUGcuUUGCCGu -5'
6463 5' -51.9 NC_001847.1 + 83222 0.66 0.977547
Target:  5'- --gUGUUGcGCucuuCGGCCGCGccGCGGCc -3'
miRNA:   3'- uaaACAAC-CG----GCUGGUGCuuUGCCGu -5'
6463 5' -51.9 NC_001847.1 + 22138 0.66 0.977547
Target:  5'- -------cGUCGACCGCGG-GCGGCAa -3'
miRNA:   3'- uaaacaacCGGCUGGUGCUuUGCCGU- -5'
6463 5' -51.9 NC_001847.1 + 32969 0.66 0.977046
Target:  5'- -----gUGGCCGACUugGcggcugagcuuGCGGCGg -3'
miRNA:   3'- uaaacaACCGGCUGGugCuu---------UGCCGU- -5'
6463 5' -51.9 NC_001847.1 + 49336 0.66 0.974962
Target:  5'- ----cUUGGCCG-CCGCGuccaugguCGGCAg -3'
miRNA:   3'- uaaacAACCGGCuGGUGCuuu-----GCCGU- -5'
6463 5' -51.9 NC_001847.1 + 84025 0.66 0.974962
Target:  5'- --cUGUggUGGUCGACgGCGAGcucGCGcGCGa -3'
miRNA:   3'- uaaACA--ACCGGCUGgUGCUU---UGC-CGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.