miRNA display CGI


Results 1 - 20 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6463 5' -51.9 NC_001847.1 + 3532 0.66 0.969155
Target:  5'- cUUUGcgcGGCuCGGCgCGCGGAuuGCGGCGg -3'
miRNA:   3'- uAAACaa-CCG-GCUG-GUGCUU--UGCCGU- -5'
6463 5' -51.9 NC_001847.1 + 3532 0.74 0.66225
Target:  5'- -----gUGGCCGACUACGGccgcgagcgcGGCGGCGg -3'
miRNA:   3'- uaaacaACCGGCUGGUGCU----------UUGCCGU- -5'
6463 5' -51.9 NC_001847.1 + 4276 0.69 0.894362
Target:  5'- ----uUUGG-CGGCCACGAGGCGcGCGc -3'
miRNA:   3'- uaaacAACCgGCUGGUGCUUUGC-CGU- -5'
6463 5' -51.9 NC_001847.1 + 4541 0.7 0.848541
Target:  5'- ---cGgcGGCCGcCCGCGGGuggcGCGGCGu -3'
miRNA:   3'- uaaaCaaCCGGCuGGUGCUU----UGCCGU- -5'
6463 5' -51.9 NC_001847.1 + 5833 0.71 0.831474
Target:  5'- --cUGgcGGCCGccGCCGCGcgcGACGGCGc -3'
miRNA:   3'- uaaACaaCCGGC--UGGUGCu--UUGCCGU- -5'
6463 5' -51.9 NC_001847.1 + 6833 0.67 0.958737
Target:  5'- ------cGGCCGGCCGCc--GCGGCc -3'
miRNA:   3'- uaaacaaCCGGCUGGUGcuuUGCCGu -5'
6463 5' -51.9 NC_001847.1 + 7963 0.69 0.894362
Target:  5'- ---aGgcGGCCGgcuGCCGCGGcaggGGCGGCGg -3'
miRNA:   3'- uaaaCaaCCGGC---UGGUGCU----UUGCCGU- -5'
6463 5' -51.9 NC_001847.1 + 8450 0.66 0.977547
Target:  5'- ------cGGCCGugUAUGgcAUGGCAa -3'
miRNA:   3'- uaaacaaCCGGCugGUGCuuUGCCGU- -5'
6463 5' -51.9 NC_001847.1 + 9802 0.66 0.974962
Target:  5'- ---cGUcUGGCCGGCCGCuGGcguucagcGCGGCu -3'
miRNA:   3'- uaaaCA-ACCGGCUGGUGcUU--------UGCCGu -5'
6463 5' -51.9 NC_001847.1 + 10282 0.66 0.972168
Target:  5'- ------cGGCCGggcccgcucGCCGCGAAGgCGGCu -3'
miRNA:   3'- uaaacaaCCGGC---------UGGUGCUUU-GCCGu -5'
6463 5' -51.9 NC_001847.1 + 10595 0.67 0.958737
Target:  5'- ---aGggGaGCCGGgCGCGggGgCGGCAg -3'
miRNA:   3'- uaaaCaaC-CGGCUgGUGCuuU-GCCGU- -5'
6463 5' -51.9 NC_001847.1 + 13296 0.7 0.872511
Target:  5'- -------cGCCGGCCGCGGcaGGCGGCGc -3'
miRNA:   3'- uaaacaacCGGCUGGUGCU--UUGCCGU- -5'
6463 5' -51.9 NC_001847.1 + 13746 0.71 0.822638
Target:  5'- ---cGUggGGCUGAUCGCGcAGCGGCu -3'
miRNA:   3'- uaaaCAa-CCGGCUGGUGCuUUGCCGu -5'
6463 5' -51.9 NC_001847.1 + 14038 0.7 0.856756
Target:  5'- ---cGcUGGUCGGCCGCGAGccgcuagguucGCGGCc -3'
miRNA:   3'- uaaaCaACCGGCUGGUGCUU-----------UGCCGu -5'
6463 5' -51.9 NC_001847.1 + 14300 0.67 0.954784
Target:  5'- --aUGgcgUGGCCGGCCGCcucucGGggccucaucgAGCGGCGg -3'
miRNA:   3'- uaaACa--ACCGGCUGGUG-----CU----------UUGCCGU- -5'
6463 5' -51.9 NC_001847.1 + 14453 0.71 0.822638
Target:  5'- ---aGgcGGCCGGCCACGccauuucgccGCGGCGg -3'
miRNA:   3'- uaaaCaaCCGGCUGGUGCuu--------UGCCGU- -5'
6463 5' -51.9 NC_001847.1 + 15913 0.67 0.962446
Target:  5'- ---aGcgGGCCGcCCGCGu--CGGCAu -3'
miRNA:   3'- uaaaCaaCCGGCuGGUGCuuuGCCGU- -5'
6463 5' -51.9 NC_001847.1 + 16081 0.75 0.63015
Target:  5'- ------cGGCC-ACCGCGggGCGGCGg -3'
miRNA:   3'- uaaacaaCCGGcUGGUGCuuUGCCGU- -5'
6463 5' -51.9 NC_001847.1 + 16141 0.78 0.474117
Target:  5'- ------cGGCCG-CCGCGggGCGGCGg -3'
miRNA:   3'- uaaacaaCCGGCuGGUGCuuUGCCGU- -5'
6463 5' -51.9 NC_001847.1 + 16201 0.78 0.474117
Target:  5'- ------cGGCCG-CCGCGggGCGGCGg -3'
miRNA:   3'- uaaacaaCCGGCuGGUGCuuUGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.