miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6465 3' -57.3 NC_001847.1 + 118231 0.66 0.832382
Target:  5'- --cGUCUGcGCcGAgcGGCCCGGGCUg -3'
miRNA:   3'- guaUAGACcCGaCUacCCGGGCCUGA- -5'
6465 3' -57.3 NC_001847.1 + 15644 0.66 0.832382
Target:  5'- ---cUCcGGGCUcGGgcucGGGCUCGGGCUc -3'
miRNA:   3'- guauAGaCCCGA-CUa---CCCGGGCCUGA- -5'
6465 3' -57.3 NC_001847.1 + 70669 0.66 0.823901
Target:  5'- --cAUCUgcugGGGCUGGaggggaccgcGGGCCCgGGGCUg -3'
miRNA:   3'- guaUAGA----CCCGACUa---------CCCGGG-CCUGA- -5'
6465 3' -57.3 NC_001847.1 + 45436 0.66 0.815244
Target:  5'- uGUGUUgagGGGCacgGcAUGGGCCCGcGCa -3'
miRNA:   3'- gUAUAGa--CCCGa--C-UACCCGGGCcUGa -5'
6465 3' -57.3 NC_001847.1 + 18005 0.66 0.797431
Target:  5'- --cGUCgGGGCUGuUGGGCgUGGGg- -3'
miRNA:   3'- guaUAGaCCCGACuACCCGgGCCUga -5'
6465 3' -57.3 NC_001847.1 + 133599 0.66 0.797431
Target:  5'- -cUAUC-GGGCgGgcGGGCuuGGGCg -3'
miRNA:   3'- guAUAGaCCCGaCuaCCCGggCCUGa -5'
6465 3' -57.3 NC_001847.1 + 43845 0.67 0.788293
Target:  5'- ----gCUGGcGCUGcUGGaGCCCGaGGCUg -3'
miRNA:   3'- guauaGACC-CGACuACC-CGGGC-CUGA- -5'
6465 3' -57.3 NC_001847.1 + 62785 0.67 0.782741
Target:  5'- --gGUCUGGGCccgGggGGGCgagaucgcgcacaagCCGGGCc -3'
miRNA:   3'- guaUAGACCCGa--CuaCCCG---------------GGCCUGa -5'
6465 3' -57.3 NC_001847.1 + 134912 0.67 0.779012
Target:  5'- --cGUCgGGGCgcga-GGCCCGGGCUc -3'
miRNA:   3'- guaUAGaCCCGacuacCCGGGCCUGA- -5'
6465 3' -57.3 NC_001847.1 + 32099 0.67 0.779012
Target:  5'- --cGUCgGGGCgcga-GGCCCGGGCUc -3'
miRNA:   3'- guaUAGaCCCGacuacCCGGGCCUGA- -5'
6465 3' -57.3 NC_001847.1 + 34032 0.67 0.779012
Target:  5'- ----gCUGGGCcaggcGAUGGGCcCCGcGGCg -3'
miRNA:   3'- guauaGACCCGa----CUACCCG-GGC-CUGa -5'
6465 3' -57.3 NC_001847.1 + 131720 0.67 0.769598
Target:  5'- ----cCUGGGCUGcgccUGGcccCCCGGGCUg -3'
miRNA:   3'- guauaGACCCGACu---ACCc--GGGCCUGA- -5'
6465 3' -57.3 NC_001847.1 + 79541 0.67 0.750406
Target:  5'- --cGUCgGGGCcgGggGGGCUgGGGCUc -3'
miRNA:   3'- guaUAGaCCCGa-CuaCCCGGgCCUGA- -5'
6465 3' -57.3 NC_001847.1 + 101152 0.68 0.730792
Target:  5'- ------gGGGCUGGggccgGGGCCgGGGCc -3'
miRNA:   3'- guauagaCCCGACUa----CCCGGgCCUGa -5'
6465 3' -57.3 NC_001847.1 + 106777 0.69 0.649615
Target:  5'- --cGUCUccggcgcgaGGGCgccggGGGCCCGGGCg -3'
miRNA:   3'- guaUAGA---------CCCGacua-CCCGGGCCUGa -5'
6465 3' -57.3 NC_001847.1 + 46915 0.69 0.629003
Target:  5'- ---uUCgggGGGCgcgucGGGCCCGGGCUc -3'
miRNA:   3'- guauAGa--CCCGacua-CCCGGGCCUGA- -5'
6465 3' -57.3 NC_001847.1 + 23165 0.7 0.577651
Target:  5'- ----gCUGGGCUGGggUGGGCugggCUGGGCUg -3'
miRNA:   3'- guauaGACCCGACU--ACCCG----GGCCUGA- -5'
6465 3' -57.3 NC_001847.1 + 125978 0.7 0.577651
Target:  5'- ----gCUGGGCUGGggUGGGCugggCUGGGCUg -3'
miRNA:   3'- guauaGACCCGACU--ACCCG----GGCCUGA- -5'
6465 3' -57.3 NC_001847.1 + 125758 0.7 0.577651
Target:  5'- ----gCUGGGCUGGggUGGGCUggggUGGGCUg -3'
miRNA:   3'- guauaGACCCGACU--ACCCGG----GCCUGA- -5'
6465 3' -57.3 NC_001847.1 + 77224 0.71 0.547253
Target:  5'- ------cGGGCcGccGGGCCCGGACUu -3'
miRNA:   3'- guauagaCCCGaCuaCCCGGGCCUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.