miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6465 3' -57.3 NC_001847.1 + 43045 1.07 0.002328
Target:  5'- aCAUAUCUGGGCUGAUGGGCCCGGACUc -3'
miRNA:   3'- -GUAUAGACCCGACUACCCGGGCCUGA- -5'
6465 3' -57.3 NC_001847.1 + 87660 0.73 0.423327
Target:  5'- -cUGUUUGGGCUGcgccgcauGGCCCGGGCg -3'
miRNA:   3'- guAUAGACCCGACuac-----CCGGGCCUGa -5'
6465 3' -57.3 NC_001847.1 + 77456 0.72 0.450507
Target:  5'- --aGUCggcGGGCUGGggcGGGCgCCGGGCg -3'
miRNA:   3'- guaUAGa--CCCGACUa--CCCG-GGCCUGa -5'
6465 3' -57.3 NC_001847.1 + 125719 0.72 0.450507
Target:  5'- gCAUGgcugggCUGGGCUGGggUGGGCUggcUGGGCUg -3'
miRNA:   3'- -GUAUa-----GACCCGACU--ACCCGG---GCCUGA- -5'
6465 3' -57.3 NC_001847.1 + 125933 0.72 0.478619
Target:  5'- gGUGggCUGGGCUGGggUGGGCugggCUGGGCUg -3'
miRNA:   3'- gUAUa-GACCCGACU--ACCCG----GGCCUGA- -5'
6465 3' -57.3 NC_001847.1 + 22906 0.72 0.478619
Target:  5'- gCAUggCUGGGCUGGgcugGGGUgggCUGGGCUg -3'
miRNA:   3'- -GUAuaGACCCGACUa---CCCG---GGCCUGA- -5'
6465 3' -57.3 NC_001847.1 + 23120 0.72 0.478619
Target:  5'- gGUGggCUGGGCUGGggUGGGCugggCUGGGCUg -3'
miRNA:   3'- gUAUa-GACCCGACU--ACCCG----GGCCUGA- -5'
6465 3' -57.3 NC_001847.1 + 23075 0.72 0.497831
Target:  5'- gGUGggCUGGGCUGGggUGGGC-UGGGCUg -3'
miRNA:   3'- gUAUa-GACCCGACU--ACCCGgGCCUGA- -5'
6465 3' -57.3 NC_001847.1 + 22985 0.72 0.497831
Target:  5'- gGUGggCUGGGCUGGgcUGGGC-UGGGCUg -3'
miRNA:   3'- gUAUa-GACCCGACU--ACCCGgGCCUGA- -5'
6465 3' -57.3 NC_001847.1 + 23025 0.72 0.497831
Target:  5'- gGUGggCUGGGCUGGgcUGGGC-UGGGCUg -3'
miRNA:   3'- gUAUa-GACCCGACU--ACCCGgGCCUGA- -5'
6465 3' -57.3 NC_001847.1 + 125798 0.72 0.497831
Target:  5'- gGUGggCUGGGCUGGgcUGGGC-UGGGCUg -3'
miRNA:   3'- gUAUa-GACCCGACU--ACCCGgGCCUGA- -5'
6465 3' -57.3 NC_001847.1 + 125888 0.72 0.497831
Target:  5'- gGUGggCUGGGCUGGggUGGGC-UGGGCUg -3'
miRNA:   3'- gUAUa-GACCCGACU--ACCCGgGCCUGA- -5'
6465 3' -57.3 NC_001847.1 + 125838 0.72 0.497831
Target:  5'- gGUGggCUGGGCUGGgcUGGGC-UGGGCUg -3'
miRNA:   3'- gUAUa-GACCCGACU--ACCCGgGCCUGA- -5'
6465 3' -57.3 NC_001847.1 + 22946 0.71 0.53723
Target:  5'- ----gCUGGGCUgGGUGGGCUggggUGGGCUg -3'
miRNA:   3'- guauaGACCCGA-CUACCCGG----GCCUGA- -5'
6465 3' -57.3 NC_001847.1 + 77224 0.71 0.547253
Target:  5'- ------cGGGCcGccGGGCCCGGACUu -3'
miRNA:   3'- guauagaCCCGaCuaCCCGGGCCUGA- -5'
6465 3' -57.3 NC_001847.1 + 23165 0.7 0.577651
Target:  5'- ----gCUGGGCUGGggUGGGCugggCUGGGCUg -3'
miRNA:   3'- guauaGACCCGACU--ACCCG----GGCCUGA- -5'
6465 3' -57.3 NC_001847.1 + 125978 0.7 0.577651
Target:  5'- ----gCUGGGCUGGggUGGGCugggCUGGGCUg -3'
miRNA:   3'- guauaGACCCGACU--ACCCG----GGCCUGA- -5'
6465 3' -57.3 NC_001847.1 + 125758 0.7 0.577651
Target:  5'- ----gCUGGGCUGGggUGGGCUggggUGGGCUg -3'
miRNA:   3'- guauaGACCCGACU--ACCCGG----GCCUGA- -5'
6465 3' -57.3 NC_001847.1 + 46915 0.69 0.629003
Target:  5'- ---uUCgggGGGCgcgucGGGCCCGGGCUc -3'
miRNA:   3'- guauAGa--CCCGacua-CCCGGGCCUGA- -5'
6465 3' -57.3 NC_001847.1 + 106777 0.69 0.649615
Target:  5'- --cGUCUccggcgcgaGGGCgccggGGGCCCGGGCg -3'
miRNA:   3'- guaUAGA---------CCCGacua-CCCGGGCCUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.