miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6465 5' -54.3 NC_001847.1 + 27969 0.66 0.955599
Target:  5'- gCGGUCGCGGUGgAggcggCCGCGgcCGg -3'
miRNA:   3'- aGUCAGCGCCAUgUagg--GGUGCauGC- -5'
6465 5' -54.3 NC_001847.1 + 62569 0.66 0.955599
Target:  5'- gCGGcCGCGGUugcucggcuuuGCGUuugCCCCGCG-GCGa -3'
miRNA:   3'- aGUCaGCGCCA-----------UGUA---GGGGUGCaUGC- -5'
6465 5' -54.3 NC_001847.1 + 130782 0.66 0.955599
Target:  5'- gCGGUCGCGGUGgAggcggCCGCGgcCGg -3'
miRNA:   3'- aGUCAGCGCCAUgUagg--GGUGCauGC- -5'
6465 5' -54.3 NC_001847.1 + 103104 0.66 0.955599
Target:  5'- cCGGaccuuUCGCGGggGCuUCCCCGCGcgagcGCGg -3'
miRNA:   3'- aGUC-----AGCGCCa-UGuAGGGGUGCa----UGC- -5'
6465 5' -54.3 NC_001847.1 + 102857 0.66 0.955599
Target:  5'- --cGUCGCGGgGCcgCgCCACGcggACGg -3'
miRNA:   3'- aguCAGCGCCaUGuaGgGGUGCa--UGC- -5'
6465 5' -54.3 NC_001847.1 + 98268 0.66 0.955599
Target:  5'- gUAGUCGCca-GCAgCCCCGCGUAg- -3'
miRNA:   3'- aGUCAGCGccaUGUaGGGGUGCAUgc -5'
6465 5' -54.3 NC_001847.1 + 74990 0.66 0.951605
Target:  5'- gCGGgCGUGGcGCA-CCCCGCGUucuuCGg -3'
miRNA:   3'- aGUCaGCGCCaUGUaGGGGUGCAu---GC- -5'
6465 5' -54.3 NC_001847.1 + 113689 0.66 0.951605
Target:  5'- --cGUCGuCGGcUGCcgCgUCCGCGUGCGg -3'
miRNA:   3'- aguCAGC-GCC-AUGuaG-GGGUGCAUGC- -5'
6465 5' -54.3 NC_001847.1 + 90896 0.66 0.951605
Target:  5'- cCAGUCGcCGGcGCGcucagCCCCACGcccGCa -3'
miRNA:   3'- aGUCAGC-GCCaUGUa----GGGGUGCa--UGc -5'
6465 5' -54.3 NC_001847.1 + 60719 0.66 0.951605
Target:  5'- --cGUUGUGGUACAUUacgucggcggCCCGCGcGCGc -3'
miRNA:   3'- aguCAGCGCCAUGUAG----------GGGUGCaUGC- -5'
6465 5' -54.3 NC_001847.1 + 56404 0.66 0.951605
Target:  5'- gUCGGccggCGCGGggACAgCCaCCGCGUcGCGg -3'
miRNA:   3'- -AGUCa---GCGCCa-UGUaGG-GGUGCA-UGC- -5'
6465 5' -54.3 NC_001847.1 + 71708 0.66 0.947378
Target:  5'- gUCuG-CGCGGUGCG-CCggcccgccggcgCCGCGUGCGc -3'
miRNA:   3'- -AGuCaGCGCCAUGUaGG------------GGUGCAUGC- -5'
6465 5' -54.3 NC_001847.1 + 75614 0.66 0.947378
Target:  5'- cCAGcugcCGCGaUGCcgCCCCACG-ACGg -3'
miRNA:   3'- aGUCa---GCGCcAUGuaGGGGUGCaUGC- -5'
6465 5' -54.3 NC_001847.1 + 88372 0.66 0.942913
Target:  5'- gCGGgCGCGGcggACcggCCCCGCGcgGCGg -3'
miRNA:   3'- aGUCaGCGCCa--UGua-GGGGUGCa-UGC- -5'
6465 5' -54.3 NC_001847.1 + 45147 0.66 0.942913
Target:  5'- uUCuG-CGgGGUGCAgCCCCGCG-GCGc -3'
miRNA:   3'- -AGuCaGCgCCAUGUaGGGGUGCaUGC- -5'
6465 5' -54.3 NC_001847.1 + 121785 0.66 0.942913
Target:  5'- cCGuUCGCGGcuggaGCGUCCUCGCGgGCGc -3'
miRNA:   3'- aGUcAGCGCCa----UGUAGGGGUGCaUGC- -5'
6465 5' -54.3 NC_001847.1 + 85950 0.66 0.93821
Target:  5'- --cGUCGCGuUGcCGUCCCCGCuUGCa -3'
miRNA:   3'- aguCAGCGCcAU-GUAGGGGUGcAUGc -5'
6465 5' -54.3 NC_001847.1 + 100110 0.67 0.935272
Target:  5'- --cGUCGCGauGUGCAUCaaccgcgucagcuggCCCACGUccGCGg -3'
miRNA:   3'- aguCAGCGC--CAUGUAG---------------GGGUGCA--UGC- -5'
6465 5' -54.3 NC_001847.1 + 112972 0.67 0.933265
Target:  5'- gCAuUCGCGGcGCgaucguGUCCaCCACGUGCu -3'
miRNA:   3'- aGUcAGCGCCaUG------UAGG-GGUGCAUGc -5'
6465 5' -54.3 NC_001847.1 + 61015 0.67 0.928077
Target:  5'- aUCGGcgcCGCGcGUcACAUCCCCGgGcGCGg -3'
miRNA:   3'- -AGUCa--GCGC-CA-UGUAGGGGUgCaUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.