miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6465 5' -54.3 NC_001847.1 + 43090 1.09 0.004391
Target:  5'- uUCAGUCGCGGUACAUCCCCACGUACGc -3'
miRNA:   3'- -AGUCAGCGCCAUGUAGGGGUGCAUGC- -5'
6465 5' -54.3 NC_001847.1 + 76517 0.75 0.5353
Target:  5'- ---uUCGCGGccUACGUCCCCGCGgGCGc -3'
miRNA:   3'- agucAGCGCC--AUGUAGGGGUGCaUGC- -5'
6465 5' -54.3 NC_001847.1 + 61223 0.74 0.596184
Target:  5'- cCGGcugCGCGGUgaACGUCgUCCACGUACGc -3'
miRNA:   3'- aGUCa--GCGCCA--UGUAG-GGGUGCAUGC- -5'
6465 5' -54.3 NC_001847.1 + 26314 0.73 0.627077
Target:  5'- -gAGUCGUGGggcaGCGUCCCCAgGcGCGc -3'
miRNA:   3'- agUCAGCGCCa---UGUAGGGGUgCaUGC- -5'
6465 5' -54.3 NC_001847.1 + 78654 0.72 0.688742
Target:  5'- gCGGUCGCGcGcgccUGCGUCgCCgGCGUGCGc -3'
miRNA:   3'- aGUCAGCGC-C----AUGUAG-GGgUGCAUGC- -5'
6465 5' -54.3 NC_001847.1 + 113939 0.72 0.698904
Target:  5'- gCGGUCGCGGcgGCGUCuCCUACGccgccggGCGc -3'
miRNA:   3'- aGUCAGCGCCa-UGUAG-GGGUGCa------UGC- -5'
6465 5' -54.3 NC_001847.1 + 72193 0.71 0.729012
Target:  5'- gUCGGUCGUGGUGCcggaucugCCCCcCG-ACGa -3'
miRNA:   3'- -AGUCAGCGCCAUGua------GGGGuGCaUGC- -5'
6465 5' -54.3 NC_001847.1 + 65921 0.71 0.748674
Target:  5'- --cGUCGCGGcgucgGCGuUCCCCGCGgACGc -3'
miRNA:   3'- aguCAGCGCCa----UGU-AGGGGUGCaUGC- -5'
6465 5' -54.3 NC_001847.1 + 62733 0.7 0.777363
Target:  5'- gCGGcCGUGGc-CGUCCCCGCGU-CGg -3'
miRNA:   3'- aGUCaGCGCCauGUAGGGGUGCAuGC- -5'
6465 5' -54.3 NC_001847.1 + 70557 0.7 0.786675
Target:  5'- cUCGGagGCGG-ACGUgCCCguaACGUACGg -3'
miRNA:   3'- -AGUCagCGCCaUGUAgGGG---UGCAUGC- -5'
6465 5' -54.3 NC_001847.1 + 129403 0.7 0.813726
Target:  5'- cCGGaCgGCGGUGCGUCCCC-UGaUGCGa -3'
miRNA:   3'- aGUCaG-CGCCAUGUAGGGGuGC-AUGC- -5'
6465 5' -54.3 NC_001847.1 + 54117 0.69 0.822419
Target:  5'- gCAGUcCGCGGcgGCGUCgCCCAUGcGCu -3'
miRNA:   3'- aGUCA-GCGCCa-UGUAG-GGGUGCaUGc -5'
6465 5' -54.3 NC_001847.1 + 63177 0.69 0.830937
Target:  5'- gUCGGUCGCGGUcGCG-CgCCAUGgcCGa -3'
miRNA:   3'- -AGUCAGCGCCA-UGUaGgGGUGCauGC- -5'
6465 5' -54.3 NC_001847.1 + 28731 0.69 0.830937
Target:  5'- gCGGcCGCGGgcaGCGUCgCCGCGcGCGu -3'
miRNA:   3'- aGUCaGCGCCa--UGUAGgGGUGCaUGC- -5'
6465 5' -54.3 NC_001847.1 + 67518 0.69 0.845801
Target:  5'- aCGGUCGCGGacgcggccaacgACAUCCUCcgagagcuguGCGUACu -3'
miRNA:   3'- aGUCAGCGCCa-----------UGUAGGGG----------UGCAUGc -5'
6465 5' -54.3 NC_001847.1 + 73638 0.69 0.847414
Target:  5'- gUCGGccUCGUGGaGCAgaUCCCgGCGUACc -3'
miRNA:   3'- -AGUC--AGCGCCaUGU--AGGGgUGCAUGc -5'
6465 5' -54.3 NC_001847.1 + 116693 0.69 0.847414
Target:  5'- -gAG-CGCGG-GCGUCgUCGCGUACGa -3'
miRNA:   3'- agUCaGCGCCaUGUAGgGGUGCAUGC- -5'
6465 5' -54.3 NC_001847.1 + 47596 0.69 0.863097
Target:  5'- gUAGUgGCGGUAgAUgCCCGCGaaUACu -3'
miRNA:   3'- aGUCAgCGCCAUgUAgGGGUGC--AUGc -5'
6465 5' -54.3 NC_001847.1 + 75521 0.69 0.863097
Target:  5'- gCGGUCGCGGgcgGCGUCUgCAU-UGCGc -3'
miRNA:   3'- aGUCAGCGCCa--UGUAGGgGUGcAUGC- -5'
6465 5' -54.3 NC_001847.1 + 49312 0.68 0.877935
Target:  5'- -----gGCGGUGCugCCCCugGUGCGc -3'
miRNA:   3'- agucagCGCCAUGuaGGGGugCAUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.