miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6465 5' -54.3 NC_001847.1 + 9998 0.67 0.916974
Target:  5'- -aAGUCgGCGGcaauucGCAUCCUCGUGUGCGa -3'
miRNA:   3'- agUCAG-CGCCa-----UGUAGGGGUGCAUGC- -5'
6465 5' -54.3 NC_001847.1 + 17378 0.67 0.904903
Target:  5'- gCGGgcgCGCGGUGCGUCgUgACGgucACGa -3'
miRNA:   3'- aGUCa--GCGCCAUGUAGgGgUGCa--UGC- -5'
6465 5' -54.3 NC_001847.1 + 18411 0.68 0.891882
Target:  5'- aCAG-CGCGGcgUGCAgggCCuuggCCACGUGCGc -3'
miRNA:   3'- aGUCaGCGCC--AUGUa--GG----GGUGCAUGC- -5'
6465 5' -54.3 NC_001847.1 + 26314 0.73 0.627077
Target:  5'- -gAGUCGUGGggcaGCGUCCCCAgGcGCGc -3'
miRNA:   3'- agUCAGCGCCa---UGUAGGGGUgCaUGC- -5'
6465 5' -54.3 NC_001847.1 + 27969 0.66 0.955599
Target:  5'- gCGGUCGCGGUGgAggcggCCGCGgcCGg -3'
miRNA:   3'- aGUCAGCGCCAUgUagg--GGUGCauGC- -5'
6465 5' -54.3 NC_001847.1 + 28731 0.69 0.830937
Target:  5'- gCGGcCGCGGgcaGCGUCgCCGCGcGCGu -3'
miRNA:   3'- aGUCaGCGCCa--UGUAGgGGUGCaUGC- -5'
6465 5' -54.3 NC_001847.1 + 43090 1.09 0.004391
Target:  5'- uUCAGUCGCGGUACAUCCCCACGUACGc -3'
miRNA:   3'- -AGUCAGCGCCAUGUAGGGGUGCAUGC- -5'
6465 5' -54.3 NC_001847.1 + 45147 0.66 0.942913
Target:  5'- uUCuG-CGgGGUGCAgCCCCGCG-GCGc -3'
miRNA:   3'- -AGuCaGCgCCAUGUaGGGGUGCaUGC- -5'
6465 5' -54.3 NC_001847.1 + 46130 0.67 0.928077
Target:  5'- --cGUCGUaGG-GCAUCCCCGCGaACu -3'
miRNA:   3'- aguCAGCG-CCaUGUAGGGGUGCaUGc -5'
6465 5' -54.3 NC_001847.1 + 47596 0.69 0.863097
Target:  5'- gUAGUgGCGGUAgAUgCCCGCGaaUACu -3'
miRNA:   3'- aGUCAgCGCCAUgUAgGGGUGC--AUGc -5'
6465 5' -54.3 NC_001847.1 + 49312 0.68 0.877935
Target:  5'- -----gGCGGUGCugCCCCugGUGCGc -3'
miRNA:   3'- agucagCGCCAUGuaGGGGugCAUGC- -5'
6465 5' -54.3 NC_001847.1 + 49912 0.67 0.916974
Target:  5'- cCGGcCGCGGUgGCG-CUgCGCGUGCGc -3'
miRNA:   3'- aGUCaGCGCCA-UGUaGGgGUGCAUGC- -5'
6465 5' -54.3 NC_001847.1 + 54117 0.69 0.822419
Target:  5'- gCAGUcCGCGGcgGCGUCgCCCAUGcGCu -3'
miRNA:   3'- aGUCA-GCGCCa-UGUAG-GGGUGCaUGc -5'
6465 5' -54.3 NC_001847.1 + 56404 0.66 0.951605
Target:  5'- gUCGGccggCGCGGggACAgCCaCCGCGUcGCGg -3'
miRNA:   3'- -AGUCa---GCGCCa-UGUaGG-GGUGCA-UGC- -5'
6465 5' -54.3 NC_001847.1 + 60719 0.66 0.951605
Target:  5'- --cGUUGUGGUACAUUacgucggcggCCCGCGcGCGc -3'
miRNA:   3'- aguCAGCGCCAUGUAG----------GGGUGCaUGC- -5'
6465 5' -54.3 NC_001847.1 + 61015 0.67 0.928077
Target:  5'- aUCGGcgcCGCGcGUcACAUCCCCGgGcGCGg -3'
miRNA:   3'- -AGUCa--GCGC-CA-UGUAGGGGUgCaUGC- -5'
6465 5' -54.3 NC_001847.1 + 61223 0.74 0.596184
Target:  5'- cCGGcugCGCGGUgaACGUCgUCCACGUACGc -3'
miRNA:   3'- aGUCa--GCGCCA--UGUAG-GGGUGCAUGC- -5'
6465 5' -54.3 NC_001847.1 + 62569 0.66 0.955599
Target:  5'- gCGGcCGCGGUugcucggcuuuGCGUuugCCCCGCG-GCGa -3'
miRNA:   3'- aGUCaGCGCCA-----------UGUA---GGGGUGCaUGC- -5'
6465 5' -54.3 NC_001847.1 + 62733 0.7 0.777363
Target:  5'- gCGGcCGUGGc-CGUCCCCGCGU-CGg -3'
miRNA:   3'- aGUCaGCGCCauGUAGGGGUGCAuGC- -5'
6465 5' -54.3 NC_001847.1 + 63177 0.69 0.830937
Target:  5'- gUCGGUCGCGGUcGCG-CgCCAUGgcCGa -3'
miRNA:   3'- -AGUCAGCGCCA-UGUaGgGGUGCauGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.