Results 1 - 20 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6465 | 5' | -54.3 | NC_001847.1 | + | 121785 | 0.66 | 0.942913 |
Target: 5'- cCGuUCGCGGcuggaGCGUCCUCGCGgGCGc -3' miRNA: 3'- aGUcAGCGCCa----UGUAGGGGUGCaUGC- -5' |
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6465 | 5' | -54.3 | NC_001847.1 | + | 17378 | 0.67 | 0.904903 |
Target: 5'- gCGGgcgCGCGGUGCGUCgUgACGgucACGa -3' miRNA: 3'- aGUCa--GCGCCAUGUAGgGgUGCa--UGC- -5' |
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6465 | 5' | -54.3 | NC_001847.1 | + | 70437 | 0.67 | 0.911059 |
Target: 5'- gUCGGUgGCGGUGCcgcgCCUgACGcacUGCGa -3' miRNA: 3'- -AGUCAgCGCCAUGua--GGGgUGC---AUGC- -5' |
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6465 | 5' | -54.3 | NC_001847.1 | + | 9998 | 0.67 | 0.916974 |
Target: 5'- -aAGUCgGCGGcaauucGCAUCCUCGUGUGCGa -3' miRNA: 3'- agUCAG-CGCCa-----UGUAGGGGUGCAUGC- -5' |
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6465 | 5' | -54.3 | NC_001847.1 | + | 49912 | 0.67 | 0.916974 |
Target: 5'- cCGGcCGCGGUgGCG-CUgCGCGUGCGc -3' miRNA: 3'- aGUCaGCGCCA-UGUaGGgGUGCAUGC- -5' |
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6465 | 5' | -54.3 | NC_001847.1 | + | 46130 | 0.67 | 0.928077 |
Target: 5'- --cGUCGUaGG-GCAUCCCCGCGaACu -3' miRNA: 3'- aguCAGCG-CCaUGUAGGGGUGCaUGc -5' |
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6465 | 5' | -54.3 | NC_001847.1 | + | 115582 | 0.67 | 0.928077 |
Target: 5'- gCGGcgaUCGCGG-GCGUCgaUCGCGUGCGg -3' miRNA: 3'- aGUC---AGCGCCaUGUAGg-GGUGCAUGC- -5' |
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6465 | 5' | -54.3 | NC_001847.1 | + | 61015 | 0.67 | 0.928077 |
Target: 5'- aUCGGcgcCGCGcGUcACAUCCCCGgGcGCGg -3' miRNA: 3'- -AGUCa--GCGC-CA-UGUAGGGGUgCaUGC- -5' |
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6465 | 5' | -54.3 | NC_001847.1 | + | 85950 | 0.66 | 0.93821 |
Target: 5'- --cGUCGCGuUGcCGUCCCCGCuUGCa -3' miRNA: 3'- aguCAGCGCcAU-GUAGGGGUGcAUGc -5' |
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6465 | 5' | -54.3 | NC_001847.1 | + | 18411 | 0.68 | 0.891882 |
Target: 5'- aCAG-CGCGGcgUGCAgggCCuuggCCACGUGCGc -3' miRNA: 3'- aGUCaGCGCC--AUGUa--GG----GGUGCAUGC- -5' |
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6465 | 5' | -54.3 | NC_001847.1 | + | 49312 | 0.68 | 0.877935 |
Target: 5'- -----gGCGGUGCugCCCCugGUGCGc -3' miRNA: 3'- agucagCGCCAUGuaGGGGugCAUGC- -5' |
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6465 | 5' | -54.3 | NC_001847.1 | + | 116693 | 0.69 | 0.847414 |
Target: 5'- -gAG-CGCGG-GCGUCgUCGCGUACGa -3' miRNA: 3'- agUCaGCGCCaUGUAGgGGUGCAUGC- -5' |
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6465 | 5' | -54.3 | NC_001847.1 | + | 61223 | 0.74 | 0.596184 |
Target: 5'- cCGGcugCGCGGUgaACGUCgUCCACGUACGc -3' miRNA: 3'- aGUCa--GCGCCA--UGUAG-GGGUGCAUGC- -5' |
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6465 | 5' | -54.3 | NC_001847.1 | + | 26314 | 0.73 | 0.627077 |
Target: 5'- -gAGUCGUGGggcaGCGUCCCCAgGcGCGc -3' miRNA: 3'- agUCAGCGCCa---UGUAGGGGUgCaUGC- -5' |
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6465 | 5' | -54.3 | NC_001847.1 | + | 78654 | 0.72 | 0.688742 |
Target: 5'- gCGGUCGCGcGcgccUGCGUCgCCgGCGUGCGc -3' miRNA: 3'- aGUCAGCGC-C----AUGUAG-GGgUGCAUGC- -5' |
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6465 | 5' | -54.3 | NC_001847.1 | + | 72193 | 0.71 | 0.729012 |
Target: 5'- gUCGGUCGUGGUGCcggaucugCCCCcCG-ACGa -3' miRNA: 3'- -AGUCAGCGCCAUGua------GGGGuGCaUGC- -5' |
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6465 | 5' | -54.3 | NC_001847.1 | + | 65921 | 0.71 | 0.748674 |
Target: 5'- --cGUCGCGGcgucgGCGuUCCCCGCGgACGc -3' miRNA: 3'- aguCAGCGCCa----UGU-AGGGGUGCaUGC- -5' |
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6465 | 5' | -54.3 | NC_001847.1 | + | 70557 | 0.7 | 0.786675 |
Target: 5'- cUCGGagGCGG-ACGUgCCCguaACGUACGg -3' miRNA: 3'- -AGUCagCGCCaUGUAgGGG---UGCAUGC- -5' |
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6465 | 5' | -54.3 | NC_001847.1 | + | 28731 | 0.69 | 0.830937 |
Target: 5'- gCGGcCGCGGgcaGCGUCgCCGCGcGCGu -3' miRNA: 3'- aGUCaGCGCCa--UGUAGgGGUGCaUGC- -5' |
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6465 | 5' | -54.3 | NC_001847.1 | + | 63177 | 0.69 | 0.830937 |
Target: 5'- gUCGGUCGCGGUcGCG-CgCCAUGgcCGa -3' miRNA: 3'- -AGUCAGCGCCA-UGUaGgGGUGCauGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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