miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6466 3' -54 NC_001847.1 + 46519 0.66 0.962362
Target:  5'- gCGGCAgcgCUCGGGGGgCGgcgGCGgcgCGc -3'
miRNA:   3'- -GCUGUa--GAGCCUCUgGCa--CGCaa-GCa -5'
6466 3' -54 NC_001847.1 + 51537 0.66 0.962362
Target:  5'- -aACAUgUCGGAGGCUGcGCGcgCGc -3'
miRNA:   3'- gcUGUAgAGCCUCUGGCaCGCaaGCa -5'
6466 3' -54 NC_001847.1 + 73250 0.66 0.958786
Target:  5'- gGGCGcgCUC-GAGGCCGUGCGcgCa- -3'
miRNA:   3'- gCUGUa-GAGcCUCUGGCACGCaaGca -5'
6466 3' -54 NC_001847.1 + 15310 0.66 0.946683
Target:  5'- aCGGCG--UCGGGGGCCGcggGCGUagCGg -3'
miRNA:   3'- -GCUGUagAGCCUCUGGCa--CGCAa-GCa -5'
6466 3' -54 NC_001847.1 + 96649 0.66 0.946683
Target:  5'- -cGCGUCgugcgCGGGGGCCG-GCGgguacgcgUCGUg -3'
miRNA:   3'- gcUGUAGa----GCCUCUGGCaCGCa-------AGCA- -5'
6466 3' -54 NC_001847.1 + 27840 0.66 0.946683
Target:  5'- uGACAUgagCGGAGAccCCGUGCGggCc- -3'
miRNA:   3'- gCUGUAga-GCCUCU--GGCACGCaaGca -5'
6466 3' -54 NC_001847.1 + 9885 0.67 0.942177
Target:  5'- aCGAUcUUUUGcGAGGCCGUcGCGcUCGUg -3'
miRNA:   3'- -GCUGuAGAGC-CUCUGGCA-CGCaAGCA- -5'
6466 3' -54 NC_001847.1 + 131926 0.67 0.942177
Target:  5'- gCGGCGgcgCGGAGGCaCGUGCGccggCGa -3'
miRNA:   3'- -GCUGUagaGCCUCUG-GCACGCaa--GCa -5'
6466 3' -54 NC_001847.1 + 111301 0.67 0.92174
Target:  5'- aGGCcagccggCUCGG-GGCCGUGCGcgCGc -3'
miRNA:   3'- gCUGua-----GAGCCuCUGGCACGCaaGCa -5'
6466 3' -54 NC_001847.1 + 21297 0.67 0.916023
Target:  5'- gCGGCAUCcaCGGGGACCG-GCGcgCc- -3'
miRNA:   3'- -GCUGUAGa-GCCUCUGGCaCGCaaGca -5'
6466 3' -54 NC_001847.1 + 130746 0.68 0.890757
Target:  5'- uCGGCGUCgacggCGGcGACCGUgGCGccgUCGa -3'
miRNA:   3'- -GCUGUAGa----GCCuCUGGCA-CGCa--AGCa -5'
6466 3' -54 NC_001847.1 + 74801 0.69 0.846039
Target:  5'- uCGACGggccCUCGGuAGugCGUGUGggCGa -3'
miRNA:   3'- -GCUGUa---GAGCC-UCugGCACGCaaGCa -5'
6466 3' -54 NC_001847.1 + 91042 0.71 0.756642
Target:  5'- cCGGCGUCUCGGAcaaaGGCCGcacacGCGgUCGg -3'
miRNA:   3'- -GCUGUAGAGCCU----CUGGCa----CGCaAGCa -5'
6466 3' -54 NC_001847.1 + 42632 1.08 0.005147
Target:  5'- gCGACAUCUCGGAGACCGUGCGUUCGUa -3'
miRNA:   3'- -GCUGUAGAGCCUCUGGCACGCAAGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.