miRNA display CGI


Results 1 - 20 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6466 5' -58.8 NC_001847.1 + 125072 0.65 0.786771
Target:  5'- cGCGCGGCggggCGCUGGGCcCgcgcggccaaGAUGUCg -3'
miRNA:   3'- -UGUGCCG----GCGGCCCGaGaaa-------CUGCAG- -5'
6466 5' -58.8 NC_001847.1 + 65527 0.65 0.784952
Target:  5'- -uGCGGCCGcCCGGccgcgccGCUCgUUuuauacucacgcggUGGCGUCa -3'
miRNA:   3'- ugUGCCGGC-GGCC-------CGAG-AA--------------ACUGCAG- -5'
6466 5' -58.8 NC_001847.1 + 71941 0.66 0.77946
Target:  5'- gACGCGGagagcgCGCgCGGGCUCggccaUGGCG-Cg -3'
miRNA:   3'- -UGUGCCg-----GCG-GCCCGAGaa---ACUGCaG- -5'
6466 5' -58.8 NC_001847.1 + 11364 0.66 0.77946
Target:  5'- cGCGCGGCCGCgCGGcGCgaucaaCUacggGACGa- -3'
miRNA:   3'- -UGUGCCGGCG-GCC-CGa-----GAaa--CUGCag -5'
6466 5' -58.8 NC_001847.1 + 67684 0.66 0.77946
Target:  5'- cCGCGGCCGCCGcGCgcgCgcugGACcUCg -3'
miRNA:   3'- uGUGCCGGCGGCcCGa--Gaaa-CUGcAG- -5'
6466 5' -58.8 NC_001847.1 + 59861 0.66 0.77854
Target:  5'- gGCGCGGUCGCCGagggccggcgcgcGGCcUCcgcgUUGGCGa- -3'
miRNA:   3'- -UGUGCCGGCGGC-------------CCG-AGa---AACUGCag -5'
6466 5' -58.8 NC_001847.1 + 85181 0.66 0.776696
Target:  5'- uGCACGGCCugcgcguacucggcGCCGGGCagcccGGCGg- -3'
miRNA:   3'- -UGUGCCGG--------------CGGCCCGagaaaCUGCag -5'
6466 5' -58.8 NC_001847.1 + 75518 0.66 0.770203
Target:  5'- aGCGCGGUCG-CGGGC-----GGCGUCu -3'
miRNA:   3'- -UGUGCCGGCgGCCCGagaaaCUGCAG- -5'
6466 5' -58.8 NC_001847.1 + 54236 0.66 0.770203
Target:  5'- cCACGGCCGCuUGGGCggccacGCGUg -3'
miRNA:   3'- uGUGCCGGCG-GCCCGagaaacUGCAg -5'
6466 5' -58.8 NC_001847.1 + 99456 0.66 0.770203
Target:  5'- cCACGGCCGCCaGcagcagcgccGCUUgcgucacGACGUCg -3'
miRNA:   3'- uGUGCCGGCGGcC----------CGAGaaa----CUGCAG- -5'
6466 5' -58.8 NC_001847.1 + 28628 0.66 0.770203
Target:  5'- -gGCGGCCGCgGGGCcCgcgGcCGUg -3'
miRNA:   3'- ugUGCCGGCGgCCCGaGaaaCuGCAg -5'
6466 5' -58.8 NC_001847.1 + 86730 0.66 0.770203
Target:  5'- cACGCGGcCCGCggaGGGCgaugugucgcgCUggcgUGACGUUc -3'
miRNA:   3'- -UGUGCC-GGCGg--CCCGa----------GAa---ACUGCAG- -5'
6466 5' -58.8 NC_001847.1 + 34823 0.66 0.770203
Target:  5'- gGCA-GGCCGaCCGGGCgCUggaGGCGa- -3'
miRNA:   3'- -UGUgCCGGC-GGCCCGaGAaa-CUGCag -5'
6466 5' -58.8 NC_001847.1 + 93622 0.66 0.770203
Target:  5'- uGCucCGGCCGgCGcGGC-CgcgGACGUCu -3'
miRNA:   3'- -UGu-GCCGGCgGC-CCGaGaaaCUGCAG- -5'
6466 5' -58.8 NC_001847.1 + 131441 0.66 0.770203
Target:  5'- -gGCGGCCGCgGGGCcCgcgGcCGUg -3'
miRNA:   3'- ugUGCCGGCGgCCCGaGaaaCuGCAg -5'
6466 5' -58.8 NC_001847.1 + 50089 0.66 0.770203
Target:  5'- gGCGCGGCCaaggcugccgcGCCGGGC-----GGCGUa -3'
miRNA:   3'- -UGUGCCGG-----------CGGCCCGagaaaCUGCAg -5'
6466 5' -58.8 NC_001847.1 + 69274 0.66 0.768338
Target:  5'- -gGCGGCCG-CGGGCUUccucuacgcgGGCGUg -3'
miRNA:   3'- ugUGCCGGCgGCCCGAGaaa-------CUGCAg -5'
6466 5' -58.8 NC_001847.1 + 10243 0.66 0.767403
Target:  5'- gGCGCGcCUGCCGGGCccgCUUUucggagccgagugcGACGUg -3'
miRNA:   3'- -UGUGCcGGCGGCCCGa--GAAA--------------CUGCAg -5'
6466 5' -58.8 NC_001847.1 + 113056 0.66 0.767403
Target:  5'- gGCGCGcCUGCCGGGCccgCUUUucggagccgagugcGACGUg -3'
miRNA:   3'- -UGUGCcGGCGGCCCGa--GAAA--------------CUGCAg -5'
6466 5' -58.8 NC_001847.1 + 30496 0.66 0.760827
Target:  5'- gGCGCGGCCcUCGGGCgcgCgcuaGACGa- -3'
miRNA:   3'- -UGUGCCGGcGGCCCGa--Gaaa-CUGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.