miRNA display CGI


Results 1 - 20 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6466 5' -58.8 NC_001847.1 + 1682 0.68 0.662374
Target:  5'- cGCGCGGCCaGUucuCGGGgUCcacGGCGUCg -3'
miRNA:   3'- -UGUGCCGG-CG---GCCCgAGaaaCUGCAG- -5'
6466 5' -58.8 NC_001847.1 + 1941 0.67 0.700536
Target:  5'- cCACucgGGCCGCCGGcGCUCguccucgccgGGCGg- -3'
miRNA:   3'- uGUG---CCGGCGGCC-CGAGaaa-------CUGCag -5'
6466 5' -58.8 NC_001847.1 + 2151 0.67 0.735944
Target:  5'- aGCGcCGGgCGCCaGGGCUCggggaagagcggGugGUCc -3'
miRNA:   3'- -UGU-GCCgGCGG-CCCGAGaaa---------CugCAG- -5'
6466 5' -58.8 NC_001847.1 + 2297 0.7 0.551449
Target:  5'- gGCGgGGCCGCCGGGCggcaugGGCc-- -3'
miRNA:   3'- -UGUgCCGGCGGCCCGagaaa-CUGcag -5'
6466 5' -58.8 NC_001847.1 + 2544 0.68 0.662374
Target:  5'- gGCGCucccGCCGCCGGGC-Cgg-GGCGg- -3'
miRNA:   3'- -UGUGc---CGGCGGCCCGaGaaaCUGCag -5'
6466 5' -58.8 NC_001847.1 + 2585 0.69 0.591482
Target:  5'- uGCGCGGCCGCCGcGGC-CgcacGCGa- -3'
miRNA:   3'- -UGUGCCGGCGGC-CCGaGaaacUGCag -5'
6466 5' -58.8 NC_001847.1 + 3824 0.67 0.712441
Target:  5'- -gGCGcGCUGCCGGGCcacgccUCgccagaaGGCGUCa -3'
miRNA:   3'- ugUGC-CGGCGGCCCG------AGaaa----CUGCAG- -5'
6466 5' -58.8 NC_001847.1 + 5357 0.67 0.692554
Target:  5'- cGCGCGGCgCgGCCGGGCccaggCUccGGCGg- -3'
miRNA:   3'- -UGUGCCG-G-CGGCCCGa----GAaaCUGCag -5'
6466 5' -58.8 NC_001847.1 + 6123 0.69 0.60158
Target:  5'- gGCGCGagcgccucGCCGCCaucgggGGGCUCggUGGCGg- -3'
miRNA:   3'- -UGUGC--------CGGCGG------CCCGAGaaACUGCag -5'
6466 5' -58.8 NC_001847.1 + 8637 0.67 0.712441
Target:  5'- -aGCGGCCGCUGcGGaCUCg--GGCGcCc -3'
miRNA:   3'- ugUGCCGGCGGC-CC-GAGaaaCUGCaG- -5'
6466 5' -58.8 NC_001847.1 + 10243 0.66 0.767403
Target:  5'- gGCGCGcCUGCCGGGCccgCUUUucggagccgagugcGACGUg -3'
miRNA:   3'- -UGUGCcGGCGGCCCGa--GAAA--------------CUGCAg -5'
6466 5' -58.8 NC_001847.1 + 11364 0.66 0.77946
Target:  5'- cGCGCGGCCGCgCGGcGCgaucaaCUacggGACGa- -3'
miRNA:   3'- -UGUGCCGGCG-GCC-CGa-----GAaa--CUGCag -5'
6466 5' -58.8 NC_001847.1 + 11523 0.71 0.455846
Target:  5'- gGCACGuaGCCGCCGGGUgCUgcguucGCGUCu -3'
miRNA:   3'- -UGUGC--CGGCGGCCCGaGAaac---UGCAG- -5'
6466 5' -58.8 NC_001847.1 + 12383 0.67 0.732059
Target:  5'- -uGCGGCCuCgGGGCgcg-UGugGUCg -3'
miRNA:   3'- ugUGCCGGcGgCCCGagaaACugCAG- -5'
6466 5' -58.8 NC_001847.1 + 13303 0.69 0.60158
Target:  5'- uACGCGGgCGCCGGGCU-----GCaGUCg -3'
miRNA:   3'- -UGUGCCgGCGGCCCGAgaaacUG-CAG- -5'
6466 5' -58.8 NC_001847.1 + 14378 0.72 0.411485
Target:  5'- cGCGCGGUCGuaGaGGCUCgccgagcUGGCGUCg -3'
miRNA:   3'- -UGUGCCGGCggC-CCGAGaa-----ACUGCAG- -5'
6466 5' -58.8 NC_001847.1 + 15034 0.76 0.251012
Target:  5'- cCGCGGCCGCCGGGCgagCUgUGcgaGCGcCa -3'
miRNA:   3'- uGUGCCGGCGGCCCGa--GAaAC---UGCaG- -5'
6466 5' -58.8 NC_001847.1 + 15558 0.71 0.465026
Target:  5'- cGCGCGGCCGUCGGGC-CgcgGcCGcCg -3'
miRNA:   3'- -UGUGCCGGCGGCCCGaGaaaCuGCaG- -5'
6466 5' -58.8 NC_001847.1 + 15629 0.72 0.437786
Target:  5'- cCGCGGCCGCCgccccuccGGGCUCg--GGC-UCg -3'
miRNA:   3'- uGUGCCGGCGG--------CCCGAGaaaCUGcAG- -5'
6466 5' -58.8 NC_001847.1 + 16055 0.66 0.760827
Target:  5'- cCGCGGCgGCCGcGGCgccUCUgcugGGCGcCu -3'
miRNA:   3'- uGUGCCGgCGGC-CCG---AGAaa--CUGCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.