miRNA display CGI


Results 1 - 20 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6466 5' -58.8 NC_001847.1 + 89523 0.71 0.483666
Target:  5'- cGCGCuGCCGCCGGGCggcagcGACGg- -3'
miRNA:   3'- -UGUGcCGGCGGCCCGagaaa-CUGCag -5'
6466 5' -58.8 NC_001847.1 + 78091 0.72 0.429794
Target:  5'- -gGCGGCgGCCGGGCUCgauccgccucuugGACG-Cg -3'
miRNA:   3'- ugUGCCGgCGGCCCGAGaaa----------CUGCaG- -5'
6466 5' -58.8 NC_001847.1 + 15629 0.72 0.437786
Target:  5'- cCGCGGCCGCCgccccuccGGGCUCg--GGC-UCg -3'
miRNA:   3'- uGUGCCGGCGG--------CCCGAGaaaCUGcAG- -5'
6466 5' -58.8 NC_001847.1 + 122656 0.71 0.446765
Target:  5'- -uGCGGCCuCCGGGCUUU---ACGUCu -3'
miRNA:   3'- ugUGCCGGcGGCCCGAGAaacUGCAG- -5'
6466 5' -58.8 NC_001847.1 + 98491 0.71 0.446765
Target:  5'- aGCACGcGCCGCCaGGCUUcgugGACGcCa -3'
miRNA:   3'- -UGUGC-CGGCGGcCCGAGaaa-CUGCaG- -5'
6466 5' -58.8 NC_001847.1 + 74401 0.71 0.455846
Target:  5'- cGCGCGGCCGCCgcgcgcgcgcGGGC-CgccGACGUa -3'
miRNA:   3'- -UGUGCCGGCGG----------CCCGaGaaaCUGCAg -5'
6466 5' -58.8 NC_001847.1 + 15558 0.71 0.465026
Target:  5'- cGCGCGGCCGUCGGGC-CgcgGcCGcCg -3'
miRNA:   3'- -UGUGCCGGCGGCCCGaGaaaCuGCaG- -5'
6466 5' -58.8 NC_001847.1 + 134878 0.71 0.4743
Target:  5'- -gGCGGCCcCCGGGCUCgggccccugGGCGcCg -3'
miRNA:   3'- ugUGCCGGcGGCCCGAGaaa------CUGCaG- -5'
6466 5' -58.8 NC_001847.1 + 90238 0.71 0.483666
Target:  5'- uCGCGGCCGCCGccgcGGC-CUgUGACG-Cg -3'
miRNA:   3'- uGUGCCGGCGGC----CCGaGAaACUGCaG- -5'
6466 5' -58.8 NC_001847.1 + 133768 0.72 0.411485
Target:  5'- aGCGCGuGCUGCCGGcGCUCgacgGGCG-Ca -3'
miRNA:   3'- -UGUGC-CGGCGGCC-CGAGaaa-CUGCaG- -5'
6466 5' -58.8 NC_001847.1 + 30408 0.72 0.411485
Target:  5'- gGCGCuGGCCGCCGGcaaGCUCg-UGGCGg- -3'
miRNA:   3'- -UGUG-CCGGCGGCC---CGAGaaACUGCag -5'
6466 5' -58.8 NC_001847.1 + 56665 0.72 0.411485
Target:  5'- cGCACGuGCUGUCGGGCagCUUggaGACGUa -3'
miRNA:   3'- -UGUGC-CGGCGGCCCGa-GAAa--CUGCAg -5'
6466 5' -58.8 NC_001847.1 + 34092 0.76 0.245102
Target:  5'- -gGCGGCCGCCGuGGCUCgcgcGGCGg- -3'
miRNA:   3'- ugUGCCGGCGGC-CCGAGaaa-CUGCag -5'
6466 5' -58.8 NC_001847.1 + 15034 0.76 0.251012
Target:  5'- cCGCGGCCGCCGGGCgagCUgUGcgaGCGcCa -3'
miRNA:   3'- uGUGCCGGCGGCCCGa--GAaAC---UGCaG- -5'
6466 5' -58.8 NC_001847.1 + 92424 0.75 0.294354
Target:  5'- cGCGCGGCCGCCcgccgcgccaaauccGGGCugggagguguccacgUCUgaGACGUCa -3'
miRNA:   3'- -UGUGCCGGCGG---------------CCCG---------------AGAaaCUGCAG- -5'
6466 5' -58.8 NC_001847.1 + 55761 0.75 0.302582
Target:  5'- cGCGCGGCCGUgcccugaguaCGGGCUCg--GGCGg- -3'
miRNA:   3'- -UGUGCCGGCG----------GCCCGAGaaaCUGCag -5'
6466 5' -58.8 NC_001847.1 + 75780 0.74 0.309573
Target:  5'- aACACGGCCG-CGGGCUCggcgcGGCG-Cg -3'
miRNA:   3'- -UGUGCCGGCgGCCCGAGaaa--CUGCaG- -5'
6466 5' -58.8 NC_001847.1 + 45514 0.73 0.377984
Target:  5'- gGCGCcGCCGCCGGGCggCgcgGACGg- -3'
miRNA:   3'- -UGUGcCGGCGGCCCGa-GaaaCUGCag -5'
6466 5' -58.8 NC_001847.1 + 77221 0.72 0.394504
Target:  5'- cCGCgGGCCGCCGGGCcCggacUUGGCG-Cg -3'
miRNA:   3'- uGUG-CCGGCGGCCCGaGa---AACUGCaG- -5'
6466 5' -58.8 NC_001847.1 + 118077 0.72 0.402938
Target:  5'- uGC-CGGaCCGUCGGGCUCUUUaGCGa- -3'
miRNA:   3'- -UGuGCC-GGCGGCCCGAGAAAcUGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.