miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6467 3' -56.2 NC_001847.1 + 87882 0.66 0.895209
Target:  5'- cCGCaCGgCCGUGGAGAAGCUcaaGCUg--- -3'
miRNA:   3'- -GCG-GCaGGCACCUUUUCGA---CGAgcca -5'
6467 3' -56.2 NC_001847.1 + 115958 0.66 0.888479
Target:  5'- gGUCG-CCGcUGGAAacgagagaaGAGCUGCcaUCGGg -3'
miRNA:   3'- gCGGCaGGC-ACCUU---------UUCGACG--AGCCa -5'
6467 3' -56.2 NC_001847.1 + 14484 0.66 0.888479
Target:  5'- aCGCCGUCCc-GGAGgcGCUGguucugucggaCUCGGc -3'
miRNA:   3'- -GCGGCAGGcaCCUUuuCGAC-----------GAGCCa -5'
6467 3' -56.2 NC_001847.1 + 34532 0.66 0.888479
Target:  5'- uCGCCaGggcCCGagccUGGccGGGCUGCUCGGc -3'
miRNA:   3'- -GCGG-Ca--GGC----ACCuuUUCGACGAGCCa -5'
6467 3' -56.2 NC_001847.1 + 5563 0.66 0.886415
Target:  5'- uCGCCGUCCGcgacggcaaaugccUGGu--GGCcGCgCGGUa -3'
miRNA:   3'- -GCGGCAGGC--------------ACCuuuUCGaCGaGCCA- -5'
6467 3' -56.2 NC_001847.1 + 101117 0.66 0.881519
Target:  5'- uCGCCGUCaggucuaucacUGUGGAGAugGGCgcggggGCUgGGg -3'
miRNA:   3'- -GCGGCAG-----------GCACCUUU--UCGa-----CGAgCCa -5'
6467 3' -56.2 NC_001847.1 + 15922 0.66 0.881519
Target:  5'- uCGUCGUCCGUGGGGuAGGCgaaGCcCGc- -3'
miRNA:   3'- -GCGGCAGGCACCUU-UUCGa--CGaGCca -5'
6467 3' -56.2 NC_001847.1 + 51583 0.66 0.874336
Target:  5'- gCGCCGgggcagCCGUcGGGAGGGCagUGCUCc-- -3'
miRNA:   3'- -GCGGCa-----GGCA-CCUUUUCG--ACGAGcca -5'
6467 3' -56.2 NC_001847.1 + 54535 0.66 0.874336
Target:  5'- gGCCGUCCGgGGGcgcagacggcgGGGGCgGCgCGGa -3'
miRNA:   3'- gCGGCAGGCaCCU-----------UUUCGaCGaGCCa -5'
6467 3' -56.2 NC_001847.1 + 79800 0.66 0.873606
Target:  5'- cCGCCGUgguaccaggaacaCCGUGGccc-GCUGC-CGGa -3'
miRNA:   3'- -GCGGCA-------------GGCACCuuuuCGACGaGCCa -5'
6467 3' -56.2 NC_001847.1 + 58674 0.66 0.866934
Target:  5'- gCGCCGcugCCGUGGAAgcGCgucugUGCcgCGGc -3'
miRNA:   3'- -GCGGCa--GGCACCUUuuCG-----ACGa-GCCa -5'
6467 3' -56.2 NC_001847.1 + 34929 0.66 0.866934
Target:  5'- cCGCCG-CCGcUGGcgcAGCUGCgCGGc -3'
miRNA:   3'- -GCGGCaGGC-ACCuuuUCGACGaGCCa -5'
6467 3' -56.2 NC_001847.1 + 36010 0.66 0.866934
Target:  5'- gGCCGcgggCGUGGugcuGGGGCUGCgcgCGGa -3'
miRNA:   3'- gCGGCag--GCACCu---UUUCGACGa--GCCa -5'
6467 3' -56.2 NC_001847.1 + 30039 0.66 0.866934
Target:  5'- gGCCGcggCCGUGGgcGAcGUUGCcggcgCGGUg -3'
miRNA:   3'- gCGGCa--GGCACCuuUU-CGACGa----GCCA- -5'
6467 3' -56.2 NC_001847.1 + 62562 0.66 0.859318
Target:  5'- uGCCG-CCGcGGccgcGGUUGCUCGGc -3'
miRNA:   3'- gCGGCaGGCaCCuuu-UCGACGAGCCa -5'
6467 3' -56.2 NC_001847.1 + 25234 0.66 0.859318
Target:  5'- uCGgCGUCgCG-GGGAcaacGAGCUGC-CGGUa -3'
miRNA:   3'- -GCgGCAG-GCaCCUU----UUCGACGaGCCA- -5'
6467 3' -56.2 NC_001847.1 + 60883 0.67 0.851494
Target:  5'- gGCCGcgcCCG-GGAAGAGUUGCgugaccuccaccUCGGg -3'
miRNA:   3'- gCGGCa--GGCaCCUUUUCGACG------------AGCCa -5'
6467 3' -56.2 NC_001847.1 + 50915 0.67 0.851494
Target:  5'- cCGCgCGgCCGUGGAAAAcgUGCUCGcGg -3'
miRNA:   3'- -GCG-GCaGGCACCUUUUcgACGAGC-Ca -5'
6467 3' -56.2 NC_001847.1 + 88715 0.67 0.843469
Target:  5'- cCGCCGcgcCCGaGGAGGcuguGCUGCUCGa- -3'
miRNA:   3'- -GCGGCa--GGCaCCUUUu---CGACGAGCca -5'
6467 3' -56.2 NC_001847.1 + 125449 0.67 0.818258
Target:  5'- gGCgCGUCCG-GGGAGGGCggGCUugcccCGGg -3'
miRNA:   3'- gCG-GCAGGCaCCUUUUCGa-CGA-----GCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.