miRNA display CGI


Results 1 - 20 of 41 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6467 3' -56.2 NC_001847.1 + 42523 1.08 0.002885
Target:  5'- gCGCCGUCCGUGGAAAAGCUGCUCGGUg -3'
miRNA:   3'- -GCGGCAGGCACCUUUUCGACGAGCCA- -5'
6467 3' -56.2 NC_001847.1 + 91018 0.72 0.551119
Target:  5'- aCGCCGUgCCGgcGGAGcAGCUGCcCGGc -3'
miRNA:   3'- -GCGGCA-GGCa-CCUUuUCGACGaGCCa -5'
6467 3' -56.2 NC_001847.1 + 68875 0.72 0.560196
Target:  5'- gCGCCGcCCG-GGAGucgccgcGAGCaUGCUCGGc -3'
miRNA:   3'- -GCGGCaGGCaCCUU-------UUCG-ACGAGCCa -5'
6467 3' -56.2 NC_001847.1 + 75039 0.72 0.571346
Target:  5'- gCGCCGUCgGUGGGcggGAGGCUGCccacgaacaCGGc -3'
miRNA:   3'- -GCGGCAGgCACCU---UUUCGACGa--------GCCa -5'
6467 3' -56.2 NC_001847.1 + 38055 0.7 0.673932
Target:  5'- gCGCCG-CCGcGGcuAAGCUGCgcgCGGc -3'
miRNA:   3'- -GCGGCaGGCaCCuuUUCGACGa--GCCa -5'
6467 3' -56.2 NC_001847.1 + 27278 0.7 0.673932
Target:  5'- cCGCCGUCCGUcccgucGGAGccGCcGC-CGGUc -3'
miRNA:   3'- -GCGGCAGGCA------CCUUuuCGaCGaGCCA- -5'
6467 3' -56.2 NC_001847.1 + 130091 0.7 0.673932
Target:  5'- cCGCCGUCCGUcccgucGGAGccGCcGC-CGGUc -3'
miRNA:   3'- -GCGGCAGGCA------CCUUuuCGaCGaGCCA- -5'
6467 3' -56.2 NC_001847.1 + 79537 0.69 0.714461
Target:  5'- uCGCCGUCgGggccGGggGGGCUgggGCUCGcGg -3'
miRNA:   3'- -GCGGCAGgCa---CCuuUUCGA---CGAGC-Ca -5'
6467 3' -56.2 NC_001847.1 + 28938 0.69 0.724439
Target:  5'- aCGCCGaccaagCCGUGGAGAcGCUGgCcgCGGc -3'
miRNA:   3'- -GCGGCa-----GGCACCUUUuCGAC-Ga-GCCa -5'
6467 3' -56.2 NC_001847.1 + 68982 0.69 0.734337
Target:  5'- gCGCCaGcCCG-GGAGAcAGCgGCUCGGa -3'
miRNA:   3'- -GCGG-CaGGCaCCUUU-UCGaCGAGCCa -5'
6467 3' -56.2 NC_001847.1 + 124651 0.68 0.763453
Target:  5'- gCGCgGggCCGUcGGGGAAGCccaGCUCGGc -3'
miRNA:   3'- -GCGgCa-GGCA-CCUUUUCGa--CGAGCCa -5'
6467 3' -56.2 NC_001847.1 + 8468 0.68 0.763453
Target:  5'- gCGCCGggCCG-GGGGcGGC-GCUCGGc -3'
miRNA:   3'- -GCGGCa-GGCaCCUUuUCGaCGAGCCa -5'
6467 3' -56.2 NC_001847.1 + 111281 0.68 0.763453
Target:  5'- gCGCCGggCCG-GGGGcGGC-GCUCGGc -3'
miRNA:   3'- -GCGGCa-GGCaCCUUuUCGaCGAGCCa -5'
6467 3' -56.2 NC_001847.1 + 27144 0.68 0.772936
Target:  5'- uGCCGUCCG-GGggGcgcAGCcGCggCGGc -3'
miRNA:   3'- gCGGCAGGCaCCuuU---UCGaCGa-GCCa -5'
6467 3' -56.2 NC_001847.1 + 82962 0.68 0.781361
Target:  5'- gGCCGccugcgaUCUGUGGu--GGCUGCUcCGGc -3'
miRNA:   3'- gCGGC-------AGGCACCuuuUCGACGA-GCCa -5'
6467 3' -56.2 NC_001847.1 + 75727 0.68 0.78229
Target:  5'- cCGCCG-CCGUGGAuggccgauAGAGCagaaacUGCUCGc- -3'
miRNA:   3'- -GCGGCaGGCACCU--------UUUCG------ACGAGCca -5'
6467 3' -56.2 NC_001847.1 + 7221 0.68 0.791509
Target:  5'- gGCCGUCCaUGGcgcugcagcGGCUGgUCGGg -3'
miRNA:   3'- gCGGCAGGcACCuuu------UCGACgAGCCa -5'
6467 3' -56.2 NC_001847.1 + 92190 0.68 0.797876
Target:  5'- cCGCCGUCCGUGcGGaagcacacguggagGAAGaaaUGCUUGuGUa -3'
miRNA:   3'- -GCGGCAGGCAC-CU--------------UUUCg--ACGAGC-CA- -5'
6467 3' -56.2 NC_001847.1 + 2532 0.67 0.809502
Target:  5'- uGCCGggCCGcGGGAccGCUGCUCu-- -3'
miRNA:   3'- gCGGCa-GGCaCCUUuuCGACGAGcca -5'
6467 3' -56.2 NC_001847.1 + 115754 0.67 0.818258
Target:  5'- uCGCCGcggagCCGacGggGAGCcgGCUCGGc -3'
miRNA:   3'- -GCGGCa----GGCacCuuUUCGa-CGAGCCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.