miRNA display CGI


Results 1 - 20 of 468 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6467 5' -63 NC_001847.1 + 128077 0.66 0.651095
Target:  5'- cGGGCgGCucGCCGCGUg--CCUUGGUGGc -3'
miRNA:   3'- -CCUG-CGc-CGGCGCAggaGGAGCCGCC- -5'
6467 5' -63 NC_001847.1 + 66044 0.66 0.651095
Target:  5'- -aACGCGGCC-CGcCCgUCCgcgcgCGGCGc -3'
miRNA:   3'- ccUGCGCCGGcGCaGG-AGGa----GCCGCc -5'
6467 5' -63 NC_001847.1 + 87547 0.66 0.651095
Target:  5'- gGGAuccUGCGaccuGCCGCcggCCuUCCUCGGCGc -3'
miRNA:   3'- -CCU---GCGC----CGGCGca-GG-AGGAGCCGCc -5'
6467 5' -63 NC_001847.1 + 48774 0.66 0.651095
Target:  5'- cGcCGCGGCC-CGccgCCUCgUCuGCGGg -3'
miRNA:   3'- cCuGCGCCGGcGCa--GGAGgAGcCGCC- -5'
6467 5' -63 NC_001847.1 + 81870 0.66 0.651095
Target:  5'- cGGACGCGcGCCugggcgcgcaGCGcCCcgCCgaggCGGCGc -3'
miRNA:   3'- -CCUGCGC-CGG----------CGCaGGa-GGa---GCCGCc -5'
6467 5' -63 NC_001847.1 + 113033 0.66 0.651095
Target:  5'- aGGGCGCGcCCGCuGUCgC-CCcCGGCGc -3'
miRNA:   3'- -CCUGCGCcGGCG-CAG-GaGGaGCCGCc -5'
6467 5' -63 NC_001847.1 + 10220 0.66 0.651095
Target:  5'- aGGGCGCGcCCGCuGUCgC-CCcCGGCGc -3'
miRNA:   3'- -CCUGCGCcGGCG-CAG-GaGGaGCCGCc -5'
6467 5' -63 NC_001847.1 + 43070 0.66 0.651095
Target:  5'- cGGcaACGCGGgCGCuG-CUggCUCGGCGGc -3'
miRNA:   3'- -CC--UGCGCCgGCG-CaGGagGAGCCGCC- -5'
6467 5' -63 NC_001847.1 + 33418 0.66 0.651095
Target:  5'- uGACGUGGCCGCcauaaaCgggCgCUCGGCGu -3'
miRNA:   3'- cCUGCGCCGGCGcag---Ga--G-GAGCCGCc -5'
6467 5' -63 NC_001847.1 + 27933 0.66 0.651095
Target:  5'- ---gGCGGCCGUcucgaguUCCUCCUCGcgucCGGg -3'
miRNA:   3'- ccugCGCCGGCGc------AGGAGGAGCc---GCC- -5'
6467 5' -63 NC_001847.1 + 113516 0.66 0.645317
Target:  5'- cGGGCGCGGcCCGCG-CCggccaagcgCCgCcagcgaguuuaggggGGCGGg -3'
miRNA:   3'- -CCUGCGCC-GGCGCaGGa--------GGaG---------------CCGCC- -5'
6467 5' -63 NC_001847.1 + 10703 0.66 0.645317
Target:  5'- cGGGCGCGGcCCGCG-CCggccaagcgCCgCcagcgaguuuaggggGGCGGg -3'
miRNA:   3'- -CCUGCGCC-GGCGCaGGa--------GGaG---------------CCGCC- -5'
6467 5' -63 NC_001847.1 + 8375 0.66 0.641463
Target:  5'- aGGGCGCGGCagcguggGCGUCUgCCgCGuaGGc -3'
miRNA:   3'- -CCUGCGCCGg------CGCAGGaGGaGCcgCC- -5'
6467 5' -63 NC_001847.1 + 21354 0.66 0.641463
Target:  5'- cGAUGCGcGCCGuCGgcggcucgggCCgCCUCgGGCGGc -3'
miRNA:   3'- cCUGCGC-CGGC-GCa---------GGaGGAG-CCGCC- -5'
6467 5' -63 NC_001847.1 + 71002 0.66 0.641463
Target:  5'- uGGCG-GGCCGCauGUCCagUaCGGCGGc -3'
miRNA:   3'- cCUGCgCCGGCG--CAGGagGaGCCGCC- -5'
6467 5' -63 NC_001847.1 + 118411 0.66 0.641463
Target:  5'- cGuCGUGGCCGuCG-CCUgcggUCUCGGCGc -3'
miRNA:   3'- cCuGCGCCGGC-GCaGGA----GGAGCCGCc -5'
6467 5' -63 NC_001847.1 + 35053 0.66 0.641463
Target:  5'- cGACGgGGCUGCugacGUUCgccgCCUCgggaGGCGGc -3'
miRNA:   3'- cCUGCgCCGGCG----CAGGa---GGAG----CCGCC- -5'
6467 5' -63 NC_001847.1 + 11519 0.66 0.641463
Target:  5'- aGGGCGCcgccccGGCCGaGUUUgccgCCUUGGCuGGg -3'
miRNA:   3'- -CCUGCG------CCGGCgCAGGa---GGAGCCG-CC- -5'
6467 5' -63 NC_001847.1 + 112121 0.66 0.641463
Target:  5'- cGGcGCGUGGCCGCGgcagagUCGGUGGc -3'
miRNA:   3'- -CC-UGCGCCGGCGCaggaggAGCCGCC- -5'
6467 5' -63 NC_001847.1 + 97698 0.66 0.641463
Target:  5'- aGGccCGCuGCUGCGcucgCCgUCgUCGGCGGg -3'
miRNA:   3'- -CCu-GCGcCGGCGCa---GG-AGgAGCCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.