miRNA display CGI


Results 1 - 20 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6468 3' -60.1 NC_001847.1 + 134903 0.66 0.73941
Target:  5'- gGCGCCGgGCGUcgGgGCGcGAGGCCc-- -3'
miRNA:   3'- -CGCGGCaCGCGa-CgUGC-CUCUGGcac -5'
6468 3' -60.1 NC_001847.1 + 32090 0.66 0.73941
Target:  5'- gGCGCCGgGCGUcgGgGCGcGAGGCCc-- -3'
miRNA:   3'- -CGCGGCaCGCGa-CgUGC-CUCUGGcac -5'
6468 3' -60.1 NC_001847.1 + 32848 0.66 0.73941
Target:  5'- cCGCCGagaccgcgGCGCUcGCGCGcGAGAUCcUGg -3'
miRNA:   3'- cGCGGCa-------CGCGA-CGUGC-CUCUGGcAC- -5'
6468 3' -60.1 NC_001847.1 + 53255 0.66 0.73941
Target:  5'- gGCGCCGccucggcgggGCGCUGCGCGcccAGGCgCGc- -3'
miRNA:   3'- -CGCGGCa---------CGCGACGUGCc--UCUG-GCac -5'
6468 3' -60.1 NC_001847.1 + 32572 0.66 0.73941
Target:  5'- gGCGCCGcccGcCGCUGCcccagaGCuGGGAUCGUGc -3'
miRNA:   3'- -CGCGGCa--C-GCGACG------UGcCUCUGGCAC- -5'
6468 3' -60.1 NC_001847.1 + 28085 0.66 0.73941
Target:  5'- gGUGCUGUgGCGcCUGCcCGG-GGCCGc- -3'
miRNA:   3'- -CGCGGCA-CGC-GACGuGCCuCUGGCac -5'
6468 3' -60.1 NC_001847.1 + 34097 0.66 0.73941
Target:  5'- cCGCCGUG-GCUcGCGCGGcGGCgGa- -3'
miRNA:   3'- cGCGGCACgCGA-CGUGCCuCUGgCac -5'
6468 3' -60.1 NC_001847.1 + 92936 0.66 0.73941
Target:  5'- gGCGCCG-GCGCaucGCA-GGAGGuCCGcUGc -3'
miRNA:   3'- -CGCGGCaCGCGa--CGUgCCUCU-GGC-AC- -5'
6468 3' -60.1 NC_001847.1 + 124140 0.66 0.729843
Target:  5'- uGCGCCuG-GCuCUGCugGGAGugCa-- -3'
miRNA:   3'- -CGCGG-CaCGcGACGugCCUCugGcac -5'
6468 3' -60.1 NC_001847.1 + 13426 0.66 0.729843
Target:  5'- cGCGCCa-GCGC-GCGcCGuGAaGACCGUGu -3'
miRNA:   3'- -CGCGGcaCGCGaCGU-GC-CU-CUGGCAC- -5'
6468 3' -60.1 NC_001847.1 + 80341 0.66 0.729843
Target:  5'- cGCGCuCGccaGCGCgGCGCGGaAGGCgCGg- -3'
miRNA:   3'- -CGCG-GCa--CGCGaCGUGCC-UCUG-GCac -5'
6468 3' -60.1 NC_001847.1 + 102757 0.66 0.729843
Target:  5'- gGCGUCGUGcCGCgUGCGCGc--GCCGUu -3'
miRNA:   3'- -CGCGGCAC-GCG-ACGUGCcucUGGCAc -5'
6468 3' -60.1 NC_001847.1 + 51115 0.66 0.729843
Target:  5'- uGCGCgagGCGCUGUACG-AGGCCa-- -3'
miRNA:   3'- -CGCGgcaCGCGACGUGCcUCUGGcac -5'
6468 3' -60.1 NC_001847.1 + 8111 0.66 0.729843
Target:  5'- gGCGCCa-GCGCagGCGCGGGGcCCc-- -3'
miRNA:   3'- -CGCGGcaCGCGa-CGUGCCUCuGGcac -5'
6468 3' -60.1 NC_001847.1 + 126078 0.66 0.729843
Target:  5'- -aGCCGgcugcaauggaGCGCUGCACGGggGGGCgGa- -3'
miRNA:   3'- cgCGGCa----------CGCGACGUGCC--UCUGgCac -5'
6468 3' -60.1 NC_001847.1 + 71953 0.66 0.729843
Target:  5'- cGCGCCGcacgucgugGCGCgGCGCGagcuGGCCGa- -3'
miRNA:   3'- -CGCGGCa--------CGCGaCGUGCcu--CUGGCac -5'
6468 3' -60.1 NC_001847.1 + 74289 0.66 0.729843
Target:  5'- cGCGCUGgccucgGCGg-GCGCGGAGcuGCUGUu -3'
miRNA:   3'- -CGCGGCa-----CGCgaCGUGCCUC--UGGCAc -5'
6468 3' -60.1 NC_001847.1 + 46757 0.66 0.729843
Target:  5'- cGCGCCcgccCGCcGCGCGG-GGCCGg- -3'
miRNA:   3'- -CGCGGcac-GCGaCGUGCCuCUGGCac -5'
6468 3' -60.1 NC_001847.1 + 23265 0.66 0.729843
Target:  5'- -aGCCGgcugcaauggaGCGCUGCACGGggGGGCgGa- -3'
miRNA:   3'- cgCGGCa----------CGCGACGUGCC--UCUGgCac -5'
6468 3' -60.1 NC_001847.1 + 73004 0.66 0.729843
Target:  5'- -gGCCGcaGCGCggGCGCGGAaccaGGCCGc- -3'
miRNA:   3'- cgCGGCa-CGCGa-CGUGCCU----CUGGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.