miRNA display CGI


Results 1 - 20 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6468 3' -60.1 NC_001847.1 + 42158 0.66 0.697747
Target:  5'- aGCGCucgCGUGUgGCUGCACGccgcccgcccgcccGAG-CCGUGu -3'
miRNA:   3'- -CGCG---GCACG-CGACGUGC--------------CUCuGGCAC- -5'
6468 3' -60.1 NC_001847.1 + 33886 0.66 0.689869
Target:  5'- gGCGCCGccGCGCgugGcCGCGGgcgugcaGGACCGc- -3'
miRNA:   3'- -CGCGGCa-CGCGa--C-GUGCC-------UCUGGCac -5'
6468 3' -60.1 NC_001847.1 + 132073 0.66 0.689869
Target:  5'- cGCGCCGgacGCGCUgGCGgcgcaccCGGAG-CgCGUGc -3'
miRNA:   3'- -CGCGGCa--CGCGA-CGU-------GCCUCuG-GCAC- -5'
6468 3' -60.1 NC_001847.1 + 103202 0.66 0.690855
Target:  5'- cGCGCCGgaccGCGCUcCgACcGAGACCGa- -3'
miRNA:   3'- -CGCGGCa---CGCGAcG-UGcCUCUGGCac -5'
6468 3' -60.1 NC_001847.1 + 49276 0.66 0.690855
Target:  5'- cGCGCUGcuCGCcGCGCGGAG-CCGc- -3'
miRNA:   3'- -CGCGGCacGCGaCGUGCCUCuGGCac -5'
6468 3' -60.1 NC_001847.1 + 43798 0.66 0.690855
Target:  5'- cGCGCCG-GCGCgccggucgaggGCgACGGcGGCCGc- -3'
miRNA:   3'- -CGCGGCaCGCGa----------CG-UGCCuCUGGCac -5'
6468 3' -60.1 NC_001847.1 + 36847 0.66 0.700693
Target:  5'- gGCGgaCGUGCGCUcgGCGGcGGCCGa- -3'
miRNA:   3'- -CGCg-GCACGCGAcgUGCCuCUGGCac -5'
6468 3' -60.1 NC_001847.1 + 54807 0.66 0.690855
Target:  5'- cGCGCCGcgcugGCGa-GCGCGGGcACgGUGg -3'
miRNA:   3'- -CGCGGCa----CGCgaCGUGCCUcUGgCAC- -5'
6468 3' -60.1 NC_001847.1 + 134945 0.66 0.700693
Target:  5'- gGCGCCGgggGCGg-GgGCGGGGGCgGg- -3'
miRNA:   3'- -CGCGGCa--CGCgaCgUGCCUCUGgCac -5'
6468 3' -60.1 NC_001847.1 + 63826 0.66 0.689869
Target:  5'- cGCGCuccuggugaacaCGUGCGCUuuccugcGCGCGGGGGgCGc- -3'
miRNA:   3'- -CGCG------------GCACGCGA-------CGUGCCUCUgGCac -5'
6468 3' -60.1 NC_001847.1 + 133618 0.66 0.700693
Target:  5'- gGCGCCuucGCGC-GCGCcGAGGCCGc- -3'
miRNA:   3'- -CGCGGca-CGCGaCGUGcCUCUGGCac -5'
6468 3' -60.1 NC_001847.1 + 27699 0.66 0.690855
Target:  5'- aGCGCCG-GCGCacGCGgCGGGGGCa--- -3'
miRNA:   3'- -CGCGGCaCGCGa-CGU-GCCUCUGgcac -5'
6468 3' -60.1 NC_001847.1 + 69382 0.66 0.690855
Target:  5'- uGCGgCGgugGCGCUGC-CGGcGGCCu-- -3'
miRNA:   3'- -CGCgGCa--CGCGACGuGCCuCUGGcac -5'
6468 3' -60.1 NC_001847.1 + 64458 0.66 0.700693
Target:  5'- cCGCCGccCGCggcgGCGCGGgGGGCCGa- -3'
miRNA:   3'- cGCGGCacGCGa---CGUGCC-UCUGGCac -5'
6468 3' -60.1 NC_001847.1 + 79376 0.66 0.690855
Target:  5'- -aGCUGUGCgGCagcGCGCGGcucGCCGUGg -3'
miRNA:   3'- cgCGGCACG-CGa--CGUGCCuc-UGGCAC- -5'
6468 3' -60.1 NC_001847.1 + 50268 0.66 0.700693
Target:  5'- cGCGCUGgGCGC-GUACGuGGGCCGc- -3'
miRNA:   3'- -CGCGGCaCGCGaCGUGCcUCUGGCac -5'
6468 3' -60.1 NC_001847.1 + 104240 0.66 0.700693
Target:  5'- cCGCgGUGCGCgggcccagGCGCGuGGccACCGUGu -3'
miRNA:   3'- cGCGgCACGCGa-------CGUGCcUC--UGGCAC- -5'
6468 3' -60.1 NC_001847.1 + 131260 0.66 0.700693
Target:  5'- aCGCCGcgGCGCcGCGCGacGGGCCGc- -3'
miRNA:   3'- cGCGGCa-CGCGaCGUGCc-UCUGGCac -5'
6468 3' -60.1 NC_001847.1 + 125081 0.66 0.690855
Target:  5'- aGCGCgCG-GCGCaGCGCGcGcgugucGGCCGUGa -3'
miRNA:   3'- -CGCG-GCaCGCGaCGUGC-Cu-----CUGGCAC- -5'
6468 3' -60.1 NC_001847.1 + 12637 0.66 0.690855
Target:  5'- gGCgGCCGcUGCgGCUGCGgGGgagaGGAgCGUGg -3'
miRNA:   3'- -CG-CGGC-ACG-CGACGUgCC----UCUgGCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.