miRNA display CGI


Results 1 - 20 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6468 3' -60.1 NC_001847.1 + 41735 1.1 0.000949
Target:  5'- aGCGCCGUGCGCUGCACGGAGACCGUGa -3'
miRNA:   3'- -CGCGGCACGCGACGUGCCUCUGGCAC- -5'
6468 3' -60.1 NC_001847.1 + 59624 0.83 0.080665
Target:  5'- uGCGCCGUGCGCUGCuucgcgcaGGucauGGCCGUGc -3'
miRNA:   3'- -CGCGGCACGCGACGug------CCu---CUGGCAC- -5'
6468 3' -60.1 NC_001847.1 + 59216 0.82 0.084974
Target:  5'- cGCGCCGUGCGCuUGCACGcGucGGCCGUc -3'
miRNA:   3'- -CGCGGCACGCG-ACGUGC-Cu-CUGGCAc -5'
6468 3' -60.1 NC_001847.1 + 67208 0.82 0.089501
Target:  5'- uGUGCCGUcGUGCUGCGCGGAcGCCGUc -3'
miRNA:   3'- -CGCGGCA-CGCGACGUGCCUcUGGCAc -5'
6468 3' -60.1 NC_001847.1 + 133287 0.78 0.156743
Target:  5'- cGCGCgGUGCGCUccgGCGCaGAGugCGUGc -3'
miRNA:   3'- -CGCGgCACGCGA---CGUGcCUCugGCAC- -5'
6468 3' -60.1 NC_001847.1 + 43842 0.77 0.186333
Target:  5'- cGCGCUG-GCGCUGCugGagcccGAGGCUGUGu -3'
miRNA:   3'- -CGCGGCaCGCGACGugC-----CUCUGGCAC- -5'
6468 3' -60.1 NC_001847.1 + 74454 0.76 0.204878
Target:  5'- aCGCCGUgGCGCUGCaguacgaGCGGGGGCUGg- -3'
miRNA:   3'- cGCGGCA-CGCGACG-------UGCCUCUGGCac -5'
6468 3' -60.1 NC_001847.1 + 30920 0.76 0.21039
Target:  5'- cGCGCCG-GCGgUGCgGCGGAGGCCu-- -3'
miRNA:   3'- -CGCGGCaCGCgACG-UGCCUCUGGcac -5'
6468 3' -60.1 NC_001847.1 + 85722 0.76 0.226076
Target:  5'- aGCGCCaGUGCacggcggcagGCUGCGCGGAGcCCGc- -3'
miRNA:   3'- -CGCGG-CACG----------CGACGUGCCUCuGGCac -5'
6468 3' -60.1 NC_001847.1 + 96649 0.75 0.269019
Target:  5'- cGCGUCGUGCGCgggggccgGCggguacgcgucgugcGCGGGGGCCGg- -3'
miRNA:   3'- -CGCGGCACGCGa-------CG---------------UGCCUCUGGCac -5'
6468 3' -60.1 NC_001847.1 + 15546 0.74 0.279128
Target:  5'- gGCGCCgGUGCGC-GCGCGGccgucGGGCCGc- -3'
miRNA:   3'- -CGCGG-CACGCGaCGUGCC-----UCUGGCac -5'
6468 3' -60.1 NC_001847.1 + 29585 0.74 0.279128
Target:  5'- gGCGCCGccGCGCcggGC-CGGGGGCCGgUGg -3'
miRNA:   3'- -CGCGGCa-CGCGa--CGuGCCUCUGGC-AC- -5'
6468 3' -60.1 NC_001847.1 + 132398 0.74 0.279128
Target:  5'- gGCGCCGccGCGCcggGC-CGGGGGCCGgUGg -3'
miRNA:   3'- -CGCGGCa-CGCGa--CGuGCCUCUGGC-AC- -5'
6468 3' -60.1 NC_001847.1 + 11725 0.74 0.285599
Target:  5'- gGCgGCaCGUaugacGCGCUGCugGGGGACCGc- -3'
miRNA:   3'- -CG-CG-GCA-----CGCGACGugCCUCUGGCac -5'
6468 3' -60.1 NC_001847.1 + 36437 0.74 0.292187
Target:  5'- cGCGCCGUagcgGCGC-GCGCGGcgcGGCUGUGu -3'
miRNA:   3'- -CGCGGCA----CGCGaCGUGCCu--CUGGCAC- -5'
6468 3' -60.1 NC_001847.1 + 72337 0.74 0.292187
Target:  5'- cGCGCUGcugGUGCUGCA-GGAaGCCGUGa -3'
miRNA:   3'- -CGCGGCa--CGCGACGUgCCUcUGGCAC- -5'
6468 3' -60.1 NC_001847.1 + 116750 0.74 0.298894
Target:  5'- cGCGCUGUGCuuCUGCGCGGGGcCUGcUGg -3'
miRNA:   3'- -CGCGGCACGc-GACGUGCCUCuGGC-AC- -5'
6468 3' -60.1 NC_001847.1 + 46317 0.73 0.312663
Target:  5'- aGCGCCGaGCGCaGCACGGccgcccgcgGGGCCGc- -3'
miRNA:   3'- -CGCGGCaCGCGaCGUGCC---------UCUGGCac -5'
6468 3' -60.1 NC_001847.1 + 13803 0.73 0.319725
Target:  5'- -aGCCGgcgcaGCGgUGUACGGGGGCCGg- -3'
miRNA:   3'- cgCGGCa----CGCgACGUGCCUCUGGCac -5'
6468 3' -60.1 NC_001847.1 + 57110 0.73 0.319725
Target:  5'- cGCGCCGccgcGCGCaUGUugGGGGacgccaugGCCGUGa -3'
miRNA:   3'- -CGCGGCa---CGCG-ACGugCCUC--------UGGCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.