miRNA display CGI


Results 1 - 20 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6468 3' -60.1 NC_001847.1 + 389 0.66 0.690855
Target:  5'- cGCGCCGgaccGCGCUcCgACcGAGACCGa- -3'
miRNA:   3'- -CGCGGCa---CGCGAcG-UGcCUCUGGCac -5'
6468 3' -60.1 NC_001847.1 + 1202 0.7 0.461074
Target:  5'- aGCuCCGUGCGCUcgguguucuuuuagcGCGCGGGcGcCCGUGu -3'
miRNA:   3'- -CGcGGCACGCGA---------------CGUGCCU-CuGGCAC- -5'
6468 3' -60.1 NC_001847.1 + 1427 0.66 0.700693
Target:  5'- cCGCgGUGCGCgggcccagGCGCGuGGccACCGUGu -3'
miRNA:   3'- cGCGgCACGCGa-------CGUGCcUC--UGGCAC- -5'
6468 3' -60.1 NC_001847.1 + 1643 0.68 0.620138
Target:  5'- cGCGCagguacaCGUGCGcCUGCccgACGGccGGGCCGUc -3'
miRNA:   3'- -CGCG-------GCACGC-GACG---UGCC--UCUGGCAc -5'
6468 3' -60.1 NC_001847.1 + 2229 0.73 0.334208
Target:  5'- aGCGCCGcgGCGCUGgGCGcGGGCgUGUGg -3'
miRNA:   3'- -CGCGGCa-CGCGACgUGCcUCUG-GCAC- -5'
6468 3' -60.1 NC_001847.1 + 2573 0.67 0.661095
Target:  5'- gGCGCgG-GCGcCUGCGCGGccGCCGc- -3'
miRNA:   3'- -CGCGgCaCGC-GACGUGCCucUGGCac -5'
6468 3' -60.1 NC_001847.1 + 2617 0.66 0.720196
Target:  5'- cGCGCCGgagGUGCUucgGCGG-GACCGc- -3'
miRNA:   3'- -CGCGGCa--CGCGAcg-UGCCuCUGGCac -5'
6468 3' -60.1 NC_001847.1 + 2931 0.67 0.64113
Target:  5'- cGCGCCGccaGCGCggccgccuccaGCGCGGcGGCCGc- -3'
miRNA:   3'- -CGCGGCa--CGCGa----------CGUGCCuCUGGCac -5'
6468 3' -60.1 NC_001847.1 + 2956 0.72 0.380485
Target:  5'- gGCGCCGUGUuC-GCACuGAGACCGg- -3'
miRNA:   3'- -CGCGGCACGcGaCGUGcCUCUGGCac -5'
6468 3' -60.1 NC_001847.1 + 3071 0.7 0.503659
Target:  5'- uGCGCCGccaGCGCguccgGCGCGcAGGCCGc- -3'
miRNA:   3'- -CGCGGCa--CGCGa----CGUGCcUCUGGCac -5'
6468 3' -60.1 NC_001847.1 + 3151 0.67 0.631133
Target:  5'- gGCGCCG-GCG--GCGCGGcGGGCCGc- -3'
miRNA:   3'- -CGCGGCaCGCgaCGUGCC-UCUGGCac -5'
6468 3' -60.1 NC_001847.1 + 3242 0.69 0.551768
Target:  5'- cGCGCCGUGCucgccgGCgGCAgGGGcGCCGg- -3'
miRNA:   3'- -CGCGGCACG------CGaCGUgCCUcUGGCac -5'
6468 3' -60.1 NC_001847.1 + 3727 0.72 0.35682
Target:  5'- cGCGCCGgccacgGCGC-GCACGc-GGCCGUGc -3'
miRNA:   3'- -CGCGGCa-----CGCGaCGUGCcuCUGGCAC- -5'
6468 3' -60.1 NC_001847.1 + 3868 0.71 0.430854
Target:  5'- gGCGCCG-GgGCUGCgcagcucccaGCGGAGcgaGCCGUu -3'
miRNA:   3'- -CGCGGCaCgCGACG----------UGCCUC---UGGCAc -5'
6468 3' -60.1 NC_001847.1 + 3896 0.69 0.561569
Target:  5'- gGCGCCGcgGCGUagccaGCGCGGGcGCCGg- -3'
miRNA:   3'- -CGCGGCa-CGCGa----CGUGCCUcUGGCac -5'
6468 3' -60.1 NC_001847.1 + 3959 0.7 0.45746
Target:  5'- gGCGCCGUcuccggcgGCGaggGCGcCGGGGGCCGg- -3'
miRNA:   3'- -CGCGGCA--------CGCga-CGU-GCCUCUGGCac -5'
6468 3' -60.1 NC_001847.1 + 5670 0.71 0.430854
Target:  5'- cGCGCCGUcGCGC-GCGgCGGcGGCCGc- -3'
miRNA:   3'- -CGCGGCA-CGCGaCGU-GCCuCUGGCac -5'
6468 3' -60.1 NC_001847.1 + 5808 0.68 0.611149
Target:  5'- cGCGCU-UGCGCUugGCGCGccGGGugCGUGc -3'
miRNA:   3'- -CGCGGcACGCGA--CGUGC--CUCugGCAC- -5'
6468 3' -60.1 NC_001847.1 + 7219 0.68 0.591226
Target:  5'- uGgGCCGUccaugGCGCUGCAgcggcugguCGGGuGGCUGUGc -3'
miRNA:   3'- -CgCGGCA-----CGCGACGU---------GCCU-CUGGCAC- -5'
6468 3' -60.1 NC_001847.1 + 7729 0.7 0.484921
Target:  5'- gGCGCaggGCGCggGCGCGGAGGCgGc- -3'
miRNA:   3'- -CGCGgcaCGCGa-CGUGCCUCUGgCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.