miRNA display CGI


Results 1 - 20 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6468 5' -51.3 NC_001847.1 + 2606 0.66 0.985056
Target:  5'- cGCGAGcCCGCCGcgCCggAGGUGCuuCGg -3'
miRNA:   3'- aCGUUC-GGUGGUa-GGa-UUCGUGuuGC- -5'
6468 5' -51.3 NC_001847.1 + 47536 0.66 0.985056
Target:  5'- cGCcaAAGCCGCCGUCUcaacGGCGcCGGCc -3'
miRNA:   3'- aCG--UUCGGUGGUAGGau--UCGU-GUUGc -5'
6468 5' -51.3 NC_001847.1 + 18704 0.66 0.985056
Target:  5'- cGCGucaCCGCCAgcgCCgcgggGAGCGcCAGCGg -3'
miRNA:   3'- aCGUuc-GGUGGUa--GGa----UUCGU-GUUGC- -5'
6468 5' -51.3 NC_001847.1 + 78286 0.66 0.985056
Target:  5'- cGCGcccgGGCCGCCGggcgCagacGGCGCGGCGc -3'
miRNA:   3'- aCGU----UCGGUGGUa---Ggau-UCGUGUUGC- -5'
6468 5' -51.3 NC_001847.1 + 127402 0.66 0.985056
Target:  5'- uUGCccuGGCCGCCG-CCUccGCGCccGCGc -3'
miRNA:   3'- -ACGu--UCGGUGGUaGGAuuCGUGu-UGC- -5'
6468 5' -51.3 NC_001847.1 + 80476 0.66 0.985056
Target:  5'- cGuCGGGCCGCgCuccccguUCCgcAGCGCGGCGc -3'
miRNA:   3'- aC-GUUCGGUG-Gu------AGGauUCGUGUUGC- -5'
6468 5' -51.3 NC_001847.1 + 118955 0.66 0.985056
Target:  5'- cGCGGGCCAguuCCGauucggggUCCgcGGC-CAACGg -3'
miRNA:   3'- aCGUUCGGU---GGU--------AGGauUCGuGUUGC- -5'
6468 5' -51.3 NC_001847.1 + 121186 0.66 0.985056
Target:  5'- gGCGGGCuCGCCAcgggCCgcAGcCGCAGCu -3'
miRNA:   3'- aCGUUCG-GUGGUa---GGauUC-GUGUUGc -5'
6468 5' -51.3 NC_001847.1 + 30265 0.66 0.985056
Target:  5'- cGCucGCCGCCAcCgCUGcggcGGCGCGugGc -3'
miRNA:   3'- aCGuuCGGUGGUaG-GAU----UCGUGUugC- -5'
6468 5' -51.3 NC_001847.1 + 133628 0.66 0.985056
Target:  5'- cGCGcGCCgagGCCG-CCUAcGCGCGGCu -3'
miRNA:   3'- aCGUuCGG---UGGUaGGAUuCGUGUUGc -5'
6468 5' -51.3 NC_001847.1 + 43758 0.66 0.985056
Target:  5'- cGCGGGCcucuucgaCugCAUCCUGccgguGCugGACGc -3'
miRNA:   3'- aCGUUCG--------GugGUAGGAUu----CGugUUGC- -5'
6468 5' -51.3 NC_001847.1 + 88958 0.66 0.985056
Target:  5'- cGCcGGCCGCUA-CCgcguGCGCGugGu -3'
miRNA:   3'- aCGuUCGGUGGUaGGauu-CGUGUugC- -5'
6468 5' -51.3 NC_001847.1 + 7519 0.66 0.985056
Target:  5'- cGCAAGCaucacCGCCGUCgUGacgaAGCACAuACa -3'
miRNA:   3'- aCGUUCG-----GUGGUAGgAU----UCGUGU-UGc -5'
6468 5' -51.3 NC_001847.1 + 30815 0.66 0.985056
Target:  5'- cGCGcGCCgagGCCG-CCUAcGCGCGGCu -3'
miRNA:   3'- aCGUuCGG---UGGUaGGAUuCGUGUUGc -5'
6468 5' -51.3 NC_001847.1 + 61917 0.66 0.985056
Target:  5'- cGCGccGCCGCCccccUCCUccGCGuCAGCGg -3'
miRNA:   3'- aCGUu-CGGUGGu---AGGAuuCGU-GUUGC- -5'
6468 5' -51.3 NC_001847.1 + 133078 0.66 0.985056
Target:  5'- cGCucGCCGCCAcCgCUGcggcGGCGCGugGc -3'
miRNA:   3'- aCGuuCGGUGGUaG-GAU----UCGUGUugC- -5'
6468 5' -51.3 NC_001847.1 + 83038 0.66 0.985056
Target:  5'- cGCGGGCCgcgugGCCAUgaCC-GAGCGC-ACGa -3'
miRNA:   3'- aCGUUCGG-----UGGUA--GGaUUCGUGuUGC- -5'
6468 5' -51.3 NC_001847.1 + 30146 0.66 0.985056
Target:  5'- cGCGcGGCgCGCCGUgcgcCCUGGGUGCGugGc -3'
miRNA:   3'- aCGU-UCG-GUGGUA----GGAUUCGUGUugC- -5'
6468 5' -51.3 NC_001847.1 + 96184 0.66 0.985056
Target:  5'- cGC-GGCCGCCG-CCauGGCGCucGCGg -3'
miRNA:   3'- aCGuUCGGUGGUaGGauUCGUGu-UGC- -5'
6468 5' -51.3 NC_001847.1 + 45830 0.66 0.985056
Target:  5'- cGCccGGGCCACUcgCUgggcGGCACGGCc -3'
miRNA:   3'- aCG--UUCGGUGGuaGGau--UCGUGUUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.