miRNA display CGI


Results 1 - 20 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6469 3' -58.9 NC_001847.1 + 124738 0.66 0.783596
Target:  5'- cGGGCGA-GGCGGAGagaggaccgcggcucGCGGGCgGCa-- -3'
miRNA:   3'- -CCCGCUaCCGUCUCa--------------CGCUCG-CGcag -5'
6469 3' -58.9 NC_001847.1 + 97190 0.66 0.782683
Target:  5'- cGGGCcAUGGCuaccGGUGCGguugcucgccggGGCGCGa- -3'
miRNA:   3'- -CCCGcUACCGuc--UCACGC------------UCGCGCag -5'
6469 3' -58.9 NC_001847.1 + 126337 0.66 0.782683
Target:  5'- cGGGUGggGGUGGGG-GUGAGCGa--- -3'
miRNA:   3'- -CCCGCuaCCGUCUCaCGCUCGCgcag -5'
6469 3' -58.9 NC_001847.1 + 32214 0.66 0.782683
Target:  5'- cGGGCGG-GGcCGGGGcGCGGG-GCGcCg -3'
miRNA:   3'- -CCCGCUaCC-GUCUCaCGCUCgCGCaG- -5'
6469 3' -58.9 NC_001847.1 + 135027 0.66 0.782683
Target:  5'- cGGGCGG-GGcCGGGGcGCGGG-GCGcCg -3'
miRNA:   3'- -CCCGCUaCC-GUCUCaCGCUCgCGCaG- -5'
6469 3' -58.9 NC_001847.1 + 23524 0.66 0.782683
Target:  5'- cGGGUGggGGUGGGG-GUGAGCGa--- -3'
miRNA:   3'- -CCCGCuaCCGUCUCaCGCUCGCgcag -5'
6469 3' -58.9 NC_001847.1 + 133184 0.66 0.781769
Target:  5'- cGGGCGcgGGCugcccucgcuggaGGAGcucUGCGccGCGCGcCg -3'
miRNA:   3'- -CCCGCuaCCG-------------UCUC---ACGCu-CGCGCaG- -5'
6469 3' -58.9 NC_001847.1 + 116158 0.66 0.781769
Target:  5'- aGGCGcUGGCGGcc-GCGGGCGCcgcggccgcgcugGUCg -3'
miRNA:   3'- cCCGCuACCGUCucaCGCUCGCG-------------CAG- -5'
6469 3' -58.9 NC_001847.1 + 33827 0.66 0.773484
Target:  5'- cGGCuGUGcGCAGAc-GCGGGCGCG-Ca -3'
miRNA:   3'- cCCGcUAC-CGUCUcaCGCUCGCGCaG- -5'
6469 3' -58.9 NC_001847.1 + 134787 0.66 0.773484
Target:  5'- gGGGCGGgccccggGGCgcgaagcccgGGAGggacGCGGGCGUGg- -3'
miRNA:   3'- -CCCGCUa------CCG----------UCUCa---CGCUCGCGCag -5'
6469 3' -58.9 NC_001847.1 + 59288 0.66 0.773484
Target:  5'- cGGCGgcGGgaaaccguaccCAGGGUGCcaGGGCGCGg- -3'
miRNA:   3'- cCCGCuaCC-----------GUCUCACG--CUCGCGCag -5'
6469 3' -58.9 NC_001847.1 + 93126 0.66 0.773484
Target:  5'- cGGGCGAagcUGGCcGGGcUGCcGGCGCc-- -3'
miRNA:   3'- -CCCGCU---ACCGuCUC-ACGcUCGCGcag -5'
6469 3' -58.9 NC_001847.1 + 27704 0.66 0.773484
Target:  5'- cGGCGcacgcGGCGGGG-GCaAGgGCGUCa -3'
miRNA:   3'- cCCGCua---CCGUCUCaCGcUCgCGCAG- -5'
6469 3' -58.9 NC_001847.1 + 30063 0.66 0.773484
Target:  5'- cGGcGCGGUGGCGcGGcUGgGAGUGCuGUUc -3'
miRNA:   3'- -CC-CGCUACCGUcUC-ACgCUCGCG-CAG- -5'
6469 3' -58.9 NC_001847.1 + 83181 0.66 0.773484
Target:  5'- cGGGC--UGGCGGAcGgcgGgGGGCGCG-Ca -3'
miRNA:   3'- -CCCGcuACCGUCU-Ca--CgCUCGCGCaG- -5'
6469 3' -58.9 NC_001847.1 + 43236 0.66 0.773484
Target:  5'- uGGCGGUGGgGGcGcGCGGGCgGCG-Cg -3'
miRNA:   3'- cCCGCUACCgUCuCaCGCUCG-CGCaG- -5'
6469 3' -58.9 NC_001847.1 + 31974 0.66 0.773484
Target:  5'- gGGGCGGgccccggGGCgcgaagcccgGGAGggacGCGGGCGUGg- -3'
miRNA:   3'- -CCCGCUa------CCG----------UCUCa---CGCUCGCGCag -5'
6469 3' -58.9 NC_001847.1 + 102502 0.66 0.764162
Target:  5'- aGGCGugcaGGCAGGGca-GAGCGCG-Cg -3'
miRNA:   3'- cCCGCua--CCGUCUCacgCUCGCGCaG- -5'
6469 3' -58.9 NC_001847.1 + 103301 0.66 0.764162
Target:  5'- cGGCGgcGGCGGGGcgGCc-GCGCGcCa -3'
miRNA:   3'- cCCGCuaCCGUCUCa-CGcuCGCGCaG- -5'
6469 3' -58.9 NC_001847.1 + 19895 0.66 0.764162
Target:  5'- cGGGCGcgaGGUAGaAGcGCacGAGgGCGUCg -3'
miRNA:   3'- -CCCGCua-CCGUC-UCaCG--CUCgCGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.